miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16218 3' -51.2 NC_004065.1 + 221321 0.67 0.993534
Target:  5'- cAGGCCCCCcuaacgcgcuacuggCGAcCACCGUcGACGUu -3'
miRNA:   3'- uUCUGGGGGaa-------------GUU-GUGGCAuUUGCA- -5'
16218 3' -51.2 NC_004065.1 + 209281 0.66 0.997576
Target:  5'- --cACCCUCUUCAcccuCGCCGUGAuCGc -3'
miRNA:   3'- uucUGGGGGAAGUu---GUGGCAUUuGCa -5'
16218 3' -51.2 NC_004065.1 + 207584 1.03 0.026311
Target:  5'- cAGACCCCCUUCAACACCGUAAACGUc -3'
miRNA:   3'- uUCUGGGGGAAGUUGUGGCAUUUGCA- -5'
16218 3' -51.2 NC_004065.1 + 207169 0.66 0.997134
Target:  5'- --cGCCaCCUUCGACACCGUcccAGACu- -3'
miRNA:   3'- uucUGGgGGAAGUUGUGGCA---UUUGca -5'
16218 3' -51.2 NC_004065.1 + 202019 0.7 0.960692
Target:  5'- -uGGCgUCCUccUCGGCGCUGUAGACGa -3'
miRNA:   3'- uuCUGgGGGA--AGUUGUGGCAUUUGCa -5'
16218 3' -51.2 NC_004065.1 + 198363 0.7 0.95997
Target:  5'- uGGGACCgCCggguggucggcgUCAACGCCGUGGGCc- -3'
miRNA:   3'- -UUCUGGgGGa-----------AGUUGUGGCAUUUGca -5'
16218 3' -51.2 NC_004065.1 + 194808 0.66 0.997576
Target:  5'- -cGAgCCCCUg-AACGCCGUG-GCGg -3'
miRNA:   3'- uuCUgGGGGAagUUGUGGCAUuUGCa -5'
16218 3' -51.2 NC_004065.1 + 186037 0.66 0.997576
Target:  5'- aGGGACCCCg--CG--ACCGUGGACGa -3'
miRNA:   3'- -UUCUGGGGgaaGUugUGGCAUUUGCa -5'
16218 3' -51.2 NC_004065.1 + 173849 0.67 0.993805
Target:  5'- -uGGCCCCCcggcugggUCuuCACCGUGAuCGa -3'
miRNA:   3'- uuCUGGGGGa-------AGuuGUGGCAUUuGCa -5'
16218 3' -51.2 NC_004065.1 + 159550 0.66 0.997576
Target:  5'- cGGugUCCCUgaaCGcCGCCGUGAAgGUg -3'
miRNA:   3'- uUCugGGGGAa--GUuGUGGCAUUUgCA- -5'
16218 3' -51.2 NC_004065.1 + 155931 0.7 0.967428
Target:  5'- uAGGACCUgUUUCGGCACCGU---CGUg -3'
miRNA:   3'- -UUCUGGGgGAAGUUGUGGCAuuuGCA- -5'
16218 3' -51.2 NC_004065.1 + 152507 0.69 0.980618
Target:  5'- gAGGACCCCCUgcgAGCagGCCGUcuACGc -3'
miRNA:   3'- -UUCUGGGGGAag-UUG--UGGCAuuUGCa -5'
16218 3' -51.2 NC_004065.1 + 148591 0.67 0.993805
Target:  5'- aGAGAUCCCCguccagUUCucCGCCGggGACGa -3'
miRNA:   3'- -UUCUGGGGG------AAGuuGUGGCauUUGCa -5'
16218 3' -51.2 NC_004065.1 + 140265 0.69 0.973303
Target:  5'- -uGGCCCUCaUCAACGCCGcgucguACGUg -3'
miRNA:   3'- uuCUGGGGGaAGUUGUGGCauu---UGCA- -5'
16218 3' -51.2 NC_004065.1 + 138365 0.66 0.997924
Target:  5'- -cGACCCCCgucgUCAucGCGCCGcuguugaUAGACc- -3'
miRNA:   3'- uuCUGGGGGa---AGU--UGUGGC-------AUUUGca -5'
16218 3' -51.2 NC_004065.1 + 138205 0.66 0.996572
Target:  5'- -cGACCCCCgcuccuguauaauUUCGAUGCCGggGAgGUc -3'
miRNA:   3'- uuCUGGGGG-------------AAGUUGUGGCauUUgCA- -5'
16218 3' -51.2 NC_004065.1 + 131188 0.71 0.939814
Target:  5'- -cGACCCCCU--GACAUCGgcGGCGc -3'
miRNA:   3'- uuCUGGGGGAagUUGUGGCauUUGCa -5'
16218 3' -51.2 NC_004065.1 + 123610 0.77 0.679798
Target:  5'- -cGAUCCCCgugagCAACACCGUGGugGa -3'
miRNA:   3'- uuCUGGGGGaa---GUUGUGGCAUUugCa -5'
16218 3' -51.2 NC_004065.1 + 121346 0.66 0.997134
Target:  5'- aAAGACCUUCcaacaGACACCGUcgGCGa -3'
miRNA:   3'- -UUCUGGGGGaag--UUGUGGCAuuUGCa -5'
16218 3' -51.2 NC_004065.1 + 120508 0.71 0.929775
Target:  5'- -cGACCCCCUcUUGGCGCCGcucGACGa -3'
miRNA:   3'- uuCUGGGGGA-AGUUGUGGCau-UUGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.