miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16218 3' -51.2 NC_004065.1 + 76647 0.66 0.995389
Target:  5'- uAGACCCUaggCAGCAUCGgcucgAAACGg -3'
miRNA:   3'- uUCUGGGGgaaGUUGUGGCa----UUUGCa -5'
16218 3' -51.2 NC_004065.1 + 90679 0.68 0.987903
Target:  5'- -uGGCCCCCUUgcCGGCGCUGggcACGa -3'
miRNA:   3'- uuCUGGGGGAA--GUUGUGGCauuUGCa -5'
16218 3' -51.2 NC_004065.1 + 71663 0.67 0.991811
Target:  5'- aAGGGCCUCCUcagcagCAGCAgCGgcGGCGg -3'
miRNA:   3'- -UUCUGGGGGAa-----GUUGUgGCauUUGCa -5'
16218 3' -51.2 NC_004065.1 + 82403 0.67 0.992863
Target:  5'- gGGGACCUuaUCggCGAUAUCGUAGACGg -3'
miRNA:   3'- -UUCUGGG--GGaaGUUGUGGCAUUUGCa -5'
16218 3' -51.2 NC_004065.1 + 221321 0.67 0.993534
Target:  5'- cAGGCCCCCcuaacgcgcuacuggCGAcCACCGUcGACGUu -3'
miRNA:   3'- uUCUGGGGGaa-------------GUU-GUGGCAuUUGCA- -5'
16218 3' -51.2 NC_004065.1 + 80494 0.67 0.993805
Target:  5'- aAGGGCUUCCUugUCGAUGCCGUAGAa-- -3'
miRNA:   3'- -UUCUGGGGGA--AGUUGUGGCAUUUgca -5'
16218 3' -51.2 NC_004065.1 + 107818 0.67 0.994644
Target:  5'- cGGGCCaccagCCUguaGGCGCCGUAGAUGg -3'
miRNA:   3'- uUCUGGg----GGAag-UUGUGGCAUUUGCa -5'
16218 3' -51.2 NC_004065.1 + 16295 0.66 0.995389
Target:  5'- cAGACCUCCUUC--CACCGUugguauAUGUg -3'
miRNA:   3'- uUCUGGGGGAAGuuGUGGCAuu----UGCA- -5'
16218 3' -51.2 NC_004065.1 + 52535 0.66 0.995389
Target:  5'- -uGACCCCCggCGGCcccGCCGU--GCGc -3'
miRNA:   3'- uuCUGGGGGaaGUUG---UGGCAuuUGCa -5'
16218 3' -51.2 NC_004065.1 + 23454 0.68 0.986321
Target:  5'- cGAGGCCCCCaUCGuGCACacgcaGUAAACu- -3'
miRNA:   3'- -UUCUGGGGGaAGU-UGUGg----CAUUUGca -5'
16218 3' -51.2 NC_004065.1 + 63717 0.68 0.982687
Target:  5'- -uGAUCgCCUgguggUCGGCGCCGUAGACa- -3'
miRNA:   3'- uuCUGGgGGA-----AGUUGUGGCAUUUGca -5'
16218 3' -51.2 NC_004065.1 + 10683 0.68 0.982687
Target:  5'- uAAGAUCCCgUaCAGCACCG-AGAUGg -3'
miRNA:   3'- -UUCUGGGGgAaGUUGUGGCaUUUGCa -5'
16218 3' -51.2 NC_004065.1 + 120508 0.71 0.929775
Target:  5'- -cGACCCCCUcUUGGCGCCGcucGACGa -3'
miRNA:   3'- uuCUGGGGGA-AGUUGUGGCau-UUGCa -5'
16218 3' -51.2 NC_004065.1 + 131188 0.71 0.939814
Target:  5'- -cGACCCCCU--GACAUCGgcGGCGc -3'
miRNA:   3'- uuCUGGGGGAagUUGUGGCauUUGCa -5'
16218 3' -51.2 NC_004065.1 + 70090 0.7 0.959238
Target:  5'- cGGACCCCgaggcgacgagCAGCACCGgcAGCGg -3'
miRNA:   3'- uUCUGGGGgaa--------GUUGUGGCauUUGCa -5'
16218 3' -51.2 NC_004065.1 + 202019 0.7 0.960692
Target:  5'- -uGGCgUCCUccUCGGCGCUGUAGACGa -3'
miRNA:   3'- uuCUGgGGGA--AGUUGUGGCAUUUGCa -5'
16218 3' -51.2 NC_004065.1 + 55559 0.7 0.964171
Target:  5'- -cGugCCCCgggUCGACGuaGUAGACGg -3'
miRNA:   3'- uuCugGGGGa--AGUUGUggCAUUUGCa -5'
16218 3' -51.2 NC_004065.1 + 50454 0.69 0.975933
Target:  5'- -uGGCgCCCCUUCAGCGCCcagcACGa -3'
miRNA:   3'- uuCUG-GGGGAAGUUGUGGcauuUGCa -5'
16218 3' -51.2 NC_004065.1 + 31917 0.69 0.978369
Target:  5'- cAGACCUCgUUCuggGACGCCcGUAGGCGa -3'
miRNA:   3'- uUCUGGGGgAAG---UUGUGG-CAUUUGCa -5'
16218 3' -51.2 NC_004065.1 + 152507 0.69 0.980618
Target:  5'- gAGGACCCCCUgcgAGCagGCCGUcuACGc -3'
miRNA:   3'- -UUCUGGGGGAag-UUG--UGGCAuuUGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.