miRNA display CGI


Results 41 - 59 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16218 3' -51.2 NC_004065.1 + 138365 0.66 0.997924
Target:  5'- -cGACCCCCgucgUCAucGCGCCGcuguugaUAGACc- -3'
miRNA:   3'- uuCUGGGGGa---AGU--UGUGGC-------AUUUGca -5'
16218 3' -51.2 NC_004065.1 + 94255 0.66 0.99796
Target:  5'- --aGCCCCCUcCggUGCCGUucACGa -3'
miRNA:   3'- uucUGGGGGAaGuuGUGGCAuuUGCa -5'
16218 3' -51.2 NC_004065.1 + 52805 0.66 0.99796
Target:  5'- aGAGGCUCUCUUCugugacaagaacGGCACCGUcAGCa- -3'
miRNA:   3'- -UUCUGGGGGAAG------------UUGUGGCAuUUGca -5'
16218 3' -51.2 NC_004065.1 + 109502 0.67 0.993805
Target:  5'- gGAGACCC---UCGACAUCGUcGAGCGg -3'
miRNA:   3'- -UUCUGGGggaAGUUGUGGCA-UUUGCa -5'
16218 3' -51.2 NC_004065.1 + 173849 0.67 0.993805
Target:  5'- -uGGCCCCCcggcugggUCuuCACCGUGAuCGa -3'
miRNA:   3'- uuCUGGGGGa-------AGuuGUGGCAUUuGCa -5'
16218 3' -51.2 NC_004065.1 + 123610 0.77 0.679798
Target:  5'- -cGAUCCCCgugagCAACACCGUGGugGa -3'
miRNA:   3'- uuCUGGGGGaa---GUUGUGGCAUUugCa -5'
16218 3' -51.2 NC_004065.1 + 100708 0.71 0.939814
Target:  5'- -uGACCCCCUgguccUCGAUcCCGUGuACGUc -3'
miRNA:   3'- uuCUGGGGGA-----AGUUGuGGCAUuUGCA- -5'
16218 3' -51.2 NC_004065.1 + 198363 0.7 0.95997
Target:  5'- uGGGACCgCCggguggucggcgUCAACGCCGUGGGCc- -3'
miRNA:   3'- -UUCUGGgGGa-----------AGUUGUGGCAUUUGca -5'
16218 3' -51.2 NC_004065.1 + 97584 0.7 0.964171
Target:  5'- -cGGCgCCCUUCGACAUgcUGAACGUg -3'
miRNA:   3'- uuCUGgGGGAAGUUGUGgcAUUUGCA- -5'
16218 3' -51.2 NC_004065.1 + 155931 0.7 0.967428
Target:  5'- uAGGACCUgUUUCGGCACCGU---CGUg -3'
miRNA:   3'- -UUCUGGGgGAAGUUGUGGCAuuuGCA- -5'
16218 3' -51.2 NC_004065.1 + 39357 0.69 0.97047
Target:  5'- aGAGAUCCUCUUCGAgACCucGUGGACu- -3'
miRNA:   3'- -UUCUGGGGGAAGUUgUGG--CAUUUGca -5'
16218 3' -51.2 NC_004065.1 + 140265 0.69 0.973303
Target:  5'- -uGGCCCUCaUCAACGCCGcgucguACGUg -3'
miRNA:   3'- uuCUGGGGGaAGUUGUGGCauu---UGCA- -5'
16218 3' -51.2 NC_004065.1 + 106689 0.68 0.984585
Target:  5'- cAAGACCCUgUUCAAgACgGUGGAgGa -3'
miRNA:   3'- -UUCUGGGGgAAGUUgUGgCAUUUgCa -5'
16218 3' -51.2 NC_004065.1 + 9011 0.68 0.986321
Target:  5'- cGGGuACCCCCUUgCAACugCGg--GCGg -3'
miRNA:   3'- -UUC-UGGGGGAA-GUUGugGCauuUGCa -5'
16218 3' -51.2 NC_004065.1 + 35820 0.67 0.991811
Target:  5'- aGGGAUCCCCgUCucCAUCGUGAcgGCGg -3'
miRNA:   3'- -UUCUGGGGGaAGuuGUGGCAUU--UGCa -5'
16218 3' -51.2 NC_004065.1 + 119436 0.67 0.992863
Target:  5'- cAGGACCCUgugCUUgGGCAgCGUGAugGa -3'
miRNA:   3'- -UUCUGGGG---GAAgUUGUgGCAUUugCa -5'
16218 3' -51.2 NC_004065.1 + 81691 0.67 0.993805
Target:  5'- -uGACCaaggaCggCGACACCGUGGGCGa -3'
miRNA:   3'- uuCUGGgg---GaaGUUGUGGCAUUUGCa -5'
16218 3' -51.2 NC_004065.1 + 87318 0.67 0.993805
Target:  5'- cAGGACCCCC---GACGCCGgguccagGAGCa- -3'
miRNA:   3'- -UUCUGGGGGaagUUGUGGCa------UUUGca -5'
16218 3' -51.2 NC_004065.1 + 5120 0.79 0.607262
Target:  5'- cGGGCCUCCgcucaccgaCGACACCGUGGACGUg -3'
miRNA:   3'- uUCUGGGGGaa-------GUUGUGGCAUUUGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.