miRNA display CGI


Results 21 - 40 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16218 3' -51.2 NC_004065.1 + 45895 0.66 0.996626
Target:  5'- gGGGGCUCCgUUCAcCGCuCGUuAACGUa -3'
miRNA:   3'- -UUCUGGGGgAAGUuGUG-GCAuUUGCA- -5'
16218 3' -51.2 NC_004065.1 + 35395 0.67 0.994644
Target:  5'- uGGACCgUCaUCGGCGCCGUGGGagaGUa -3'
miRNA:   3'- uUCUGGgGGaAGUUGUGGCAUUUg--CA- -5'
16218 3' -51.2 NC_004065.1 + 109502 0.67 0.993805
Target:  5'- gGAGACCC---UCGACAUCGUcGAGCGg -3'
miRNA:   3'- -UUCUGGGggaAGUUGUGGCA-UUUGCa -5'
16218 3' -51.2 NC_004065.1 + 52805 0.66 0.99796
Target:  5'- aGAGGCUCUCUUCugugacaagaacGGCACCGUcAGCa- -3'
miRNA:   3'- -UUCUGGGGGAAG------------UUGUGGCAuUUGca -5'
16218 3' -51.2 NC_004065.1 + 10121 0.66 0.996626
Target:  5'- cAGGCCCaUCUUCAACACUuaAAAUGa -3'
miRNA:   3'- uUCUGGG-GGAAGUUGUGGcaUUUGCa -5'
16218 3' -51.2 NC_004065.1 + 173849 0.67 0.993805
Target:  5'- -uGGCCCCCcggcugggUCuuCACCGUGAuCGa -3'
miRNA:   3'- uuCUGGGGGa-------AGuuGUGGCAUUuGCa -5'
16218 3' -51.2 NC_004065.1 + 94255 0.66 0.99796
Target:  5'- --aGCCCCCUcCggUGCCGUucACGa -3'
miRNA:   3'- uucUGGGGGAaGuuGUGGCAuuUGCa -5'
16218 3' -51.2 NC_004065.1 + 87318 0.67 0.993805
Target:  5'- cAGGACCCCC---GACGCCGgguccagGAGCa- -3'
miRNA:   3'- -UUCUGGGGGaagUUGUGGCa------UUUGca -5'
16218 3' -51.2 NC_004065.1 + 81691 0.67 0.993805
Target:  5'- -uGACCaaggaCggCGACACCGUGGGCGa -3'
miRNA:   3'- uuCUGGgg---GaaGUUGUGGCAUUUGCa -5'
16218 3' -51.2 NC_004065.1 + 148591 0.67 0.993805
Target:  5'- aGAGAUCCCCguccagUUCucCGCCGggGACGa -3'
miRNA:   3'- -UUCUGGGGG------AAGuuGUGGCauUUGCa -5'
16218 3' -51.2 NC_004065.1 + 57062 0.66 0.99785
Target:  5'- cAAGGCCCCg-UCAACGUCGUugucauagaccaacGAACGUg -3'
miRNA:   3'- -UUCUGGGGgaAGUUGUGGCA--------------UUUGCA- -5'
16218 3' -51.2 NC_004065.1 + 82403 0.67 0.992863
Target:  5'- gGGGACCUuaUCggCGAUAUCGUAGACGg -3'
miRNA:   3'- -UUCUGGG--GGaaGUUGUGGCAUUUGCa -5'
16218 3' -51.2 NC_004065.1 + 71663 0.67 0.991811
Target:  5'- aAGGGCCUCCUcagcagCAGCAgCGgcGGCGg -3'
miRNA:   3'- -UUCUGGGGGAa-----GUUGUgGCauUUGCa -5'
16218 3' -51.2 NC_004065.1 + 90679 0.68 0.987903
Target:  5'- -uGGCCCCCUUgcCGGCGCUGggcACGa -3'
miRNA:   3'- uuCUGGGGGAA--GUUGUGGCauuUGCa -5'
16218 3' -51.2 NC_004065.1 + 37499 0.66 0.997134
Target:  5'- cGGACCCCUggCGGCucuCCGccAAGCGg -3'
miRNA:   3'- uUCUGGGGGaaGUUGu--GGCa-UUUGCa -5'
16218 3' -51.2 NC_004065.1 + 50454 0.69 0.975933
Target:  5'- -uGGCgCCCCUUCAGCGCCcagcACGa -3'
miRNA:   3'- uuCUG-GGGGAAGUUGUGGcauuUGCa -5'
16218 3' -51.2 NC_004065.1 + 207169 0.66 0.997134
Target:  5'- --cGCCaCCUUCGACACCGUcccAGACu- -3'
miRNA:   3'- uucUGGgGGAAGUUGUGGCA---UUUGca -5'
16218 3' -51.2 NC_004065.1 + 194808 0.66 0.997576
Target:  5'- -cGAgCCCCUg-AACGCCGUG-GCGg -3'
miRNA:   3'- uuCUgGGGGAagUUGUGGCAUuUGCa -5'
16218 3' -51.2 NC_004065.1 + 61569 0.66 0.997576
Target:  5'- gGGGACggcguuCCUCUUgGACGCCGUcucGACGUa -3'
miRNA:   3'- -UUCUG------GGGGAAgUUGUGGCAu--UUGCA- -5'
16218 3' -51.2 NC_004065.1 + 186037 0.66 0.997576
Target:  5'- aGGGACCCCg--CG--ACCGUGGACGa -3'
miRNA:   3'- -UUCUGGGGgaaGUugUGGCAUUUGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.