miRNA display CGI


Results 41 - 59 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16218 3' -51.2 NC_004065.1 + 70090 0.7 0.959238
Target:  5'- cGGACCCCgaggcgacgagCAGCACCGgcAGCGg -3'
miRNA:   3'- uUCUGGGGgaa--------GUUGUGGCauUUGCa -5'
16218 3' -51.2 NC_004065.1 + 131188 0.71 0.939814
Target:  5'- -cGACCCCCU--GACAUCGgcGGCGc -3'
miRNA:   3'- uuCUGGGGGAagUUGUGGCauUUGCa -5'
16218 3' -51.2 NC_004065.1 + 120508 0.71 0.929775
Target:  5'- -cGACCCCCUcUUGGCGCCGcucGACGa -3'
miRNA:   3'- uuCUGGGGGA-AGUUGUGGCau-UUGCa -5'
16218 3' -51.2 NC_004065.1 + 71663 0.67 0.991811
Target:  5'- aAGGGCCUCCUcagcagCAGCAgCGgcGGCGg -3'
miRNA:   3'- -UUCUGGGGGAa-----GUUGUgGCauUUGCa -5'
16218 3' -51.2 NC_004065.1 + 82403 0.67 0.992863
Target:  5'- gGGGACCUuaUCggCGAUAUCGUAGACGg -3'
miRNA:   3'- -UUCUGGG--GGaaGUUGUGGCAUUUGCa -5'
16218 3' -51.2 NC_004065.1 + 186037 0.66 0.997576
Target:  5'- aGGGACCCCg--CG--ACCGUGGACGa -3'
miRNA:   3'- -UUCUGGGGgaaGUugUGGCAUUUGCa -5'
16218 3' -51.2 NC_004065.1 + 61569 0.66 0.997576
Target:  5'- gGGGACggcguuCCUCUUgGACGCCGUcucGACGUa -3'
miRNA:   3'- -UUCUG------GGGGAAgUUGUGGCAu--UUGCA- -5'
16218 3' -51.2 NC_004065.1 + 194808 0.66 0.997576
Target:  5'- -cGAgCCCCUg-AACGCCGUG-GCGg -3'
miRNA:   3'- uuCUgGGGGAagUUGUGGCAUuUGCa -5'
16218 3' -51.2 NC_004065.1 + 207169 0.66 0.997134
Target:  5'- --cGCCaCCUUCGACACCGUcccAGACu- -3'
miRNA:   3'- uucUGGgGGAAGUUGUGGCA---UUUGca -5'
16218 3' -51.2 NC_004065.1 + 37499 0.66 0.997134
Target:  5'- cGGACCCCUggCGGCucuCCGccAAGCGg -3'
miRNA:   3'- uUCUGGGGGaaGUUGu--GGCa-UUUGCa -5'
16218 3' -51.2 NC_004065.1 + 46262 0.66 0.995389
Target:  5'- gAAGAUaaCCCgUUCGACcuggucgagGCCGUGGGCGa -3'
miRNA:   3'- -UUCUG--GGGgAAGUUG---------UGGCAUUUGCa -5'
16218 3' -51.2 NC_004065.1 + 113995 0.66 0.997134
Target:  5'- -cGGCCUCCUcgcCAGCACgGUcGACGa -3'
miRNA:   3'- uuCUGGGGGAa--GUUGUGgCAuUUGCa -5'
16218 3' -51.2 NC_004065.1 + 76647 0.66 0.995389
Target:  5'- uAGACCCUaggCAGCAUCGgcucgAAACGg -3'
miRNA:   3'- uUCUGGGGgaaGUUGUGGCa----UUUGCa -5'
16218 3' -51.2 NC_004065.1 + 52535 0.66 0.995389
Target:  5'- -uGACCCCCggCGGCcccGCCGU--GCGc -3'
miRNA:   3'- uuCUGGGGGaaGUUG---UGGCAuuUGCa -5'
16218 3' -51.2 NC_004065.1 + 16295 0.66 0.995389
Target:  5'- cAGACCUCCUUC--CACCGUugguauAUGUg -3'
miRNA:   3'- uUCUGGGGGAAGuuGUGGCAuu----UGCA- -5'
16218 3' -51.2 NC_004065.1 + 107818 0.67 0.994644
Target:  5'- cGGGCCaccagCCUguaGGCGCCGUAGAUGg -3'
miRNA:   3'- uUCUGGg----GGAag-UUGUGGCAUUUGCa -5'
16218 3' -51.2 NC_004065.1 + 80494 0.67 0.993805
Target:  5'- aAGGGCUUCCUugUCGAUGCCGUAGAa-- -3'
miRNA:   3'- -UUCUGGGGGA--AGUUGUGGCAUUUgca -5'
16218 3' -51.2 NC_004065.1 + 221321 0.67 0.993534
Target:  5'- cAGGCCCCCcuaacgcgcuacuggCGAcCACCGUcGACGUu -3'
miRNA:   3'- uUCUGGGGGaa-------------GUU-GUGGCAuUUGCA- -5'
16218 3' -51.2 NC_004065.1 + 207584 1.03 0.026311
Target:  5'- cAGACCCCCUUCAACACCGUAAACGUc -3'
miRNA:   3'- uUCUGGGGGAAGUUGUGGCAUUUGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.