miRNA display CGI


Results 1 - 20 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16218 5' -57 NC_004065.1 + 142853 0.65 0.958302
Target:  5'- aCCGCG-CGGUG--CAGGGGCuccuggacgaccccGGuCUCCa -3'
miRNA:   3'- -GGUGCuGCCACugGUCCCUG--------------UC-GAGG- -5'
16218 5' -57 NC_004065.1 + 195351 0.66 0.955798
Target:  5'- cCCGCGucuugaaGGUGGCCAacacgauagcGGGAUucCUCCg -3'
miRNA:   3'- -GGUGCug-----CCACUGGU----------CCCUGucGAGG- -5'
16218 5' -57 NC_004065.1 + 138129 0.66 0.955798
Target:  5'- aUCGCGuCGGUGAgCAuGGcuACAGCggCCg -3'
miRNA:   3'- -GGUGCuGCCACUgGUcCC--UGUCGa-GG- -5'
16218 5' -57 NC_004065.1 + 109124 0.66 0.955432
Target:  5'- -gACGGaGGUGG-CGGGGACGGCgggugacggcgguUCCg -3'
miRNA:   3'- ggUGCUgCCACUgGUCCCUGUCG-------------AGG- -5'
16218 5' -57 NC_004065.1 + 35619 0.66 0.955432
Target:  5'- uCCACGGCGGcGGCggcggCGGGGAUgucaucggcgacaGGgUCCc -3'
miRNA:   3'- -GGUGCUGCCaCUG-----GUCCCUG-------------UCgAGG- -5'
16218 5' -57 NC_004065.1 + 103610 0.66 0.952046
Target:  5'- aCCGCaGcCGG-GACCGcGGGCAGCUg- -3'
miRNA:   3'- -GGUG-CuGCCaCUGGUcCCUGUCGAgg -5'
16218 5' -57 NC_004065.1 + 44525 0.66 0.952046
Target:  5'- gCGCGAUGuu-ACCGGGGACGGUggcggcgcugccUCCc -3'
miRNA:   3'- gGUGCUGCcacUGGUCCCUGUCG------------AGG- -5'
16218 5' -57 NC_004065.1 + 30079 0.66 0.952046
Target:  5'- -gGCGGCGGUGgaagcgagGCCAGcGGuagcgagagcuGCAGCcCCg -3'
miRNA:   3'- ggUGCUGCCAC--------UGGUC-CC-----------UGUCGaGG- -5'
16218 5' -57 NC_004065.1 + 90276 0.66 0.952046
Target:  5'- aCCACGACGGgcuccuucuUGAUCugcuuGGGGAugccCGGCagCCg -3'
miRNA:   3'- -GGUGCUGCC---------ACUGG-----UCCCU----GUCGa-GG- -5'
16218 5' -57 NC_004065.1 + 141602 0.66 0.952046
Target:  5'- aCGCGACGGcGgcgggcuccgcuGCCGGcGGugGCGGCUCg -3'
miRNA:   3'- gGUGCUGCCaC------------UGGUC-CC--UGUCGAGg -5'
16218 5' -57 NC_004065.1 + 68237 0.66 0.952046
Target:  5'- gCGuCGGCGGUGACgAGgacGGAcCGGCUgCu -3'
miRNA:   3'- gGU-GCUGCCACUGgUC---CCU-GUCGAgG- -5'
16218 5' -57 NC_004065.1 + 151271 0.66 0.948086
Target:  5'- aCCuCGACuGcGUGAUCAcGGGCAGCaCCg -3'
miRNA:   3'- -GGuGCUG-C-CACUGGUcCCUGUCGaGG- -5'
16218 5' -57 NC_004065.1 + 163483 0.66 0.948086
Target:  5'- uCCGuCGGCGGc-GCCGGuGGcgGCGGCUUCa -3'
miRNA:   3'- -GGU-GCUGCCacUGGUC-CC--UGUCGAGG- -5'
16218 5' -57 NC_004065.1 + 108944 0.66 0.948086
Target:  5'- cCUGCGGCaGUacgccgacGACCuGGGGCAcgacgccagGCUCCg -3'
miRNA:   3'- -GGUGCUGcCA--------CUGGuCCCUGU---------CGAGG- -5'
16218 5' -57 NC_004065.1 + 74093 0.66 0.948086
Target:  5'- gCACGACGGUG-CCGaa-ACAGgUCCu -3'
miRNA:   3'- gGUGCUGCCACuGGUcccUGUCgAGG- -5'
16218 5' -57 NC_004065.1 + 67282 0.66 0.948086
Target:  5'- gCACGGCGGagacgcagGACCugGGGGGCuacaagugccugGGCaUCCu -3'
miRNA:   3'- gGUGCUGCCa-------CUGG--UCCCUG------------UCG-AGG- -5'
16218 5' -57 NC_004065.1 + 62366 0.66 0.948086
Target:  5'- uCgACGGCGGUGGCggCGGGGguggugGCGGCg-- -3'
miRNA:   3'- -GgUGCUGCCACUG--GUCCC------UGUCGagg -5'
16218 5' -57 NC_004065.1 + 120402 0.66 0.947678
Target:  5'- cCCuCGACGGUGGugggcaccgcggcCCGGGGGuCgAGCgcggCCu -3'
miRNA:   3'- -GGuGCUGCCACU-------------GGUCCCU-G-UCGa---GG- -5'
16218 5' -57 NC_004065.1 + 201413 0.66 0.947678
Target:  5'- gUCGCGGCGG-G-UCGGGaGuggaaccACAGCUCCu -3'
miRNA:   3'- -GGUGCUGCCaCuGGUCC-C-------UGUCGAGG- -5'
16218 5' -57 NC_004065.1 + 106340 0.66 0.947678
Target:  5'- uCCGCGuucGCGGUagcuccucgacagGACaCAGGGACuccuGCggUCCa -3'
miRNA:   3'- -GGUGC---UGCCA-------------CUG-GUCCCUGu---CG--AGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.