miRNA display CGI


Results 21 - 40 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16218 5' -57 NC_004065.1 + 164103 0.66 0.939532
Target:  5'- aCgGCGACGGUaaccgaGACCGGGG-CGuCUgCCg -3'
miRNA:   3'- -GgUGCUGCCA------CUGGUCCCuGUcGA-GG- -5'
16218 5' -57 NC_004065.1 + 68237 0.66 0.952046
Target:  5'- gCGuCGGCGGUGACgAGgacGGAcCGGCUgCu -3'
miRNA:   3'- gGU-GCUGCCACUGgUC---CCU-GUCGAgG- -5'
16218 5' -57 NC_004065.1 + 207233 0.66 0.938175
Target:  5'- -aGCGACGGUGGCCGGucgugaggacGACgaugguauauuuuuGGCUCUg -3'
miRNA:   3'- ggUGCUGCCACUGGUCc---------CUG--------------UCGAGG- -5'
16218 5' -57 NC_004065.1 + 65314 0.66 0.943915
Target:  5'- cCCGCGugGuGgGACCGGcGGcggcggcggcaGCAGCUgCg -3'
miRNA:   3'- -GGUGCugC-CaCUGGUC-CC-----------UGUCGAgG- -5'
16218 5' -57 NC_004065.1 + 99932 0.66 0.943915
Target:  5'- uCCAUGACGccgGACCGccgcGGcGGCGGCUgCu -3'
miRNA:   3'- -GGUGCUGCca-CUGGU----CC-CUGUCGAgG- -5'
16218 5' -57 NC_004065.1 + 136668 0.66 0.939082
Target:  5'- -aGCGACGGgcgggucUGGCCGgcggcGGGcCGGCUCg -3'
miRNA:   3'- ggUGCUGCC-------ACUGGU-----CCCuGUCGAGg -5'
16218 5' -57 NC_004065.1 + 141602 0.66 0.952046
Target:  5'- aCGCGACGGcGgcgggcuccgcuGCCGGcGGugGCGGCUCg -3'
miRNA:   3'- gGUGCUGCCaC------------UGGUC-CC--UGUCGAGg -5'
16218 5' -57 NC_004065.1 + 120402 0.66 0.947678
Target:  5'- cCCuCGACGGUGGugggcaccgcggcCCGGGGGuCgAGCgcggCCu -3'
miRNA:   3'- -GGuGCUGCCACU-------------GGUCCCU-G-UCGa---GG- -5'
16218 5' -57 NC_004065.1 + 75354 0.66 0.939532
Target:  5'- uCCuCGACGGUGcCCgAGaGGAgCAGCUg- -3'
miRNA:   3'- -GGuGCUGCCACuGG-UC-CCU-GUCGAgg -5'
16218 5' -57 NC_004065.1 + 69104 0.66 0.939532
Target:  5'- gCAUGACGGUGGacgagCAGGacgcGCGGCgcgCCg -3'
miRNA:   3'- gGUGCUGCCACUg----GUCCc---UGUCGa--GG- -5'
16218 5' -57 NC_004065.1 + 28783 0.66 0.939532
Target:  5'- --gUGACGGUGACgGaGGaGAaCAGCUCg -3'
miRNA:   3'- gguGCUGCCACUGgU-CC-CU-GUCGAGg -5'
16218 5' -57 NC_004065.1 + 122819 0.67 0.925091
Target:  5'- -gGCGaACGG-GACgAGGuaucagucGACGGCUCCc -3'
miRNA:   3'- ggUGC-UGCCaCUGgUCC--------CUGUCGAGG- -5'
16218 5' -57 NC_004065.1 + 117146 0.67 0.934934
Target:  5'- cUCAgGACGGUGAaCGGcaccGACAGCgCCg -3'
miRNA:   3'- -GGUgCUGCCACUgGUCc---CUGUCGaGG- -5'
16218 5' -57 NC_004065.1 + 195273 0.67 0.908705
Target:  5'- gCC-CGGCGGgaaacugagGGCCAGGuGGaAGCUCUu -3'
miRNA:   3'- -GGuGCUGCCa--------CUGGUCC-CUgUCGAGG- -5'
16218 5' -57 NC_004065.1 + 42132 0.67 0.930121
Target:  5'- gCACGACGGgGACacgccGGACAGCg-- -3'
miRNA:   3'- gGUGCUGCCaCUGguc--CCUGUCGagg -5'
16218 5' -57 NC_004065.1 + 169776 0.67 0.919845
Target:  5'- uCCGCGACGGguuuggGAgCGggaacGGGAacgGGCUCUg -3'
miRNA:   3'- -GGUGCUGCCa-----CUgGU-----CCCUg--UCGAGG- -5'
16218 5' -57 NC_004065.1 + 127703 0.67 0.914382
Target:  5'- aCCACGcACGuGUu-UCGGGGGCuGCUCUc -3'
miRNA:   3'- -GGUGC-UGC-CAcuGGUCCCUGuCGAGG- -5'
16218 5' -57 NC_004065.1 + 212835 0.67 0.925091
Target:  5'- aUCACaACGGUGAUCAGG-AUAGCg-- -3'
miRNA:   3'- -GGUGcUGCCACUGGUCCcUGUCGagg -5'
16218 5' -57 NC_004065.1 + 55735 0.67 0.930121
Target:  5'- --cUGACGGUGAgCAGGGuccACAuGCuaUCCg -3'
miRNA:   3'- gguGCUGCCACUgGUCCC---UGU-CG--AGG- -5'
16218 5' -57 NC_004065.1 + 19840 0.67 0.930121
Target:  5'- -aGCGGCGGUG-UC-GGGACgaAGCUgCCg -3'
miRNA:   3'- ggUGCUGCCACuGGuCCCUG--UCGA-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.