miRNA display CGI


Results 41 - 60 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16218 5' -57 NC_004065.1 + 200017 0.67 0.934934
Target:  5'- gCACcGCGGUcgUCAGGGGCAGgUgCCg -3'
miRNA:   3'- gGUGcUGCCAcuGGUCCCUGUCgA-GG- -5'
16218 5' -57 NC_004065.1 + 117146 0.67 0.934934
Target:  5'- cUCAgGACGGUGAaCGGcaccGACAGCgCCg -3'
miRNA:   3'- -GGUgCUGCCACUgGUCc---CUGUCGaGG- -5'
16218 5' -57 NC_004065.1 + 139881 0.67 0.913824
Target:  5'- uCCGUGACGGUGGuCCGGGuGAgGGUgaucgcaUCCc -3'
miRNA:   3'- -GGUGCUGCCACU-GGUCC-CUgUCG-------AGG- -5'
16218 5' -57 NC_004065.1 + 135153 0.67 0.928135
Target:  5'- -gACGACGGggacgucgaugacGACgAGGGACuGC-CCg -3'
miRNA:   3'- ggUGCUGCCa------------CUGgUCCCUGuCGaGG- -5'
16218 5' -57 NC_004065.1 + 153219 0.67 0.934934
Target:  5'- gCCGCGACGGcGAUgAacGGuGAUAGCguucgCCg -3'
miRNA:   3'- -GGUGCUGCCaCUGgU--CC-CUGUCGa----GG- -5'
16218 5' -57 NC_004065.1 + 76063 0.67 0.919845
Target:  5'- aCCGCGACGGcgcaGACaAGucGCAGgCUCCg -3'
miRNA:   3'- -GGUGCUGCCa---CUGgUCccUGUC-GAGG- -5'
16218 5' -57 NC_004065.1 + 4419 0.67 0.925091
Target:  5'- gCCACGGCGGgccugacgcUGACCcucGGGCcucgAGCUCg -3'
miRNA:   3'- -GGUGCUGCC---------ACUGGuc-CCUG----UCGAGg -5'
16218 5' -57 NC_004065.1 + 4041 0.67 0.930121
Target:  5'- aCgGCGAUGGaGACCucGGGACcugguucaagcAGCUUCu -3'
miRNA:   3'- -GgUGCUGCCaCUGGu-CCCUG-----------UCGAGG- -5'
16218 5' -57 NC_004065.1 + 143266 0.67 0.908705
Target:  5'- cCCGCGGCGG-----GGGcGGCAGCUUCa -3'
miRNA:   3'- -GGUGCUGCCacuggUCC-CUGUCGAGG- -5'
16218 5' -57 NC_004065.1 + 122819 0.67 0.925091
Target:  5'- -gGCGaACGG-GACgAGGuaucagucGACGGCUCCc -3'
miRNA:   3'- ggUGC-UGCCaCUGgUCC--------CUGUCGAGG- -5'
16218 5' -57 NC_004065.1 + 197781 0.67 0.925091
Target:  5'- uCCgAUGAUGGcGGCgAGuccGACGGCUCCg -3'
miRNA:   3'- -GG-UGCUGCCaCUGgUCc--CUGUCGAGG- -5'
16218 5' -57 NC_004065.1 + 142477 0.67 0.926622
Target:  5'- -uGgGGCGGUGgacgcgaGCCAGGGgguggcggucugucgACGGCUCUu -3'
miRNA:   3'- ggUgCUGCCAC-------UGGUCCC---------------UGUCGAGG- -5'
16218 5' -57 NC_004065.1 + 93611 0.67 0.928634
Target:  5'- -gAUGAgGGgGGCCAGGaGACgcaucacguagacgGGCUCCu -3'
miRNA:   3'- ggUGCUgCCaCUGGUCC-CUG--------------UCGAGG- -5'
16218 5' -57 NC_004065.1 + 64784 0.67 0.930121
Target:  5'- gCACaGACagaGGggGACCAGGGAUAauauCUCCa -3'
miRNA:   3'- gGUG-CUG---CCa-CUGGUCCCUGUc---GAGG- -5'
16218 5' -57 NC_004065.1 + 94694 0.67 0.930121
Target:  5'- cUCGCGGCcccUGACCuuGGaGGGCGGCUCg -3'
miRNA:   3'- -GGUGCUGcc-ACUGG--UC-CCUGUCGAGg -5'
16218 5' -57 NC_004065.1 + 139892 0.67 0.930121
Target:  5'- -gACGA-GGUGGCCGcGGGGC--CUCCg -3'
miRNA:   3'- ggUGCUgCCACUGGU-CCCUGucGAGG- -5'
16218 5' -57 NC_004065.1 + 20128 0.67 0.934934
Target:  5'- uCUggGGCGGguUGACCuGGGAaugGGCUCa -3'
miRNA:   3'- -GGugCUGCC--ACUGGuCCCUg--UCGAGg -5'
16218 5' -57 NC_004065.1 + 211035 0.67 0.934934
Target:  5'- -uGCGcCGG-GACagCAGGGACAGCagCa -3'
miRNA:   3'- ggUGCuGCCaCUG--GUCCCUGUCGagG- -5'
16218 5' -57 NC_004065.1 + 32227 0.67 0.934934
Target:  5'- gCCGCGGgcgcUGGUGACCAacGcGGACAccgGCgaUCCg -3'
miRNA:   3'- -GGUGCU----GCCACUGGU--C-CCUGU---CG--AGG- -5'
16218 5' -57 NC_004065.1 + 88941 0.67 0.934934
Target:  5'- gCGCGGCGGUagcuGGCCAGGcccgcguaguGcCAGCcCCg -3'
miRNA:   3'- gGUGCUGCCA----CUGGUCC----------CuGUCGaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.