miRNA display CGI


Results 61 - 80 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16218 5' -57 NC_004065.1 + 211035 0.67 0.934934
Target:  5'- -uGCGcCGG-GACagCAGGGACAGCagCa -3'
miRNA:   3'- ggUGCuGCCaCUG--GUCCCUGUCGagG- -5'
16218 5' -57 NC_004065.1 + 16896 0.68 0.902815
Target:  5'- gCCACuACGGUGACCacgcAGGGAUacacgacuAGCaugaaguuggcgUCCa -3'
miRNA:   3'- -GGUGcUGCCACUGG----UCCCUG--------UCG------------AGG- -5'
16218 5' -57 NC_004065.1 + 101392 0.68 0.892952
Target:  5'- -gACGGCGGUccccuGACCuccgccaacgaccguGGGGGCGGCUg- -3'
miRNA:   3'- ggUGCUGCCA-----CUGG---------------UCCCUGUCGAgg -5'
16218 5' -57 NC_004065.1 + 170358 0.68 0.902815
Target:  5'- -gACGACGaG-GACgAGGuGGCGuGCUCCg -3'
miRNA:   3'- ggUGCUGC-CaCUGgUCC-CUGU-CGAGG- -5'
16218 5' -57 NC_004065.1 + 149308 0.68 0.883887
Target:  5'- uUCACGGgGGUagcGGCC-GGGAU-GCUCCc -3'
miRNA:   3'- -GGUGCUgCCA---CUGGuCCCUGuCGAGG- -5'
16218 5' -57 NC_004065.1 + 98687 0.68 0.87717
Target:  5'- cCCGauCGACGG-GACCcgucauGGGGACgcccAGCUUCu -3'
miRNA:   3'- -GGU--GCUGCCaCUGG------UCCCUG----UCGAGG- -5'
16218 5' -57 NC_004065.1 + 38200 0.68 0.876487
Target:  5'- aCCACGACGGcacUGAuagccCCGGGGGggugggaucccucCGGCUUg -3'
miRNA:   3'- -GGUGCUGCC---ACU-----GGUCCCU-------------GUCGAGg -5'
16218 5' -57 NC_004065.1 + 174324 0.68 0.902815
Target:  5'- cCCGCGAauGcGAUCAGGGAgauaacguaguCAGgUCCg -3'
miRNA:   3'- -GGUGCUgcCaCUGGUCCCU-----------GUCgAGG- -5'
16218 5' -57 NC_004065.1 + 104158 0.68 0.902815
Target:  5'- uCCGCGGCGGUG-UCGGucGCcGCUUCg -3'
miRNA:   3'- -GGUGCUGCCACuGGUCccUGuCGAGG- -5'
16218 5' -57 NC_004065.1 + 118028 0.68 0.896713
Target:  5'- uCC-CGACGGagGAUCAGGcGGCccuGCUCg -3'
miRNA:   3'- -GGuGCUGCCa-CUGGUCC-CUGu--CGAGg -5'
16218 5' -57 NC_004065.1 + 59938 0.68 0.894842
Target:  5'- gCGCGGCcagaagcccggaguGGUGcccGCCAGGuuGGCGGCUUCg -3'
miRNA:   3'- gGUGCUG--------------CCAC---UGGUCC--CUGUCGAGG- -5'
16218 5' -57 NC_004065.1 + 150713 0.68 0.890403
Target:  5'- aCCGcCGcCGGUGGgaggcCCAGGccgucGACAGCUCg -3'
miRNA:   3'- -GGU-GCuGCCACU-----GGUCC-----CUGUCGAGg -5'
16218 5' -57 NC_004065.1 + 135368 0.68 0.883887
Target:  5'- aCGCGGCGaGUucuUCAGGGACGGUgacgcgCCg -3'
miRNA:   3'- gGUGCUGC-CAcu-GGUCCCUGUCGa-----GG- -5'
16218 5' -57 NC_004065.1 + 195089 0.68 0.883887
Target:  5'- gCGCGGCGcaGACCcccAGGGGCgucAGCUCg -3'
miRNA:   3'- gGUGCUGCcaCUGG---UCCCUG---UCGAGg -5'
16218 5' -57 NC_004065.1 + 61419 0.68 0.881893
Target:  5'- -gACGACGGUcGAguagaggccccuacCCAGGGcCGGC-CCg -3'
miRNA:   3'- ggUGCUGCCA-CU--------------GGUCCCuGUCGaGG- -5'
16218 5' -57 NC_004065.1 + 67654 0.68 0.87717
Target:  5'- aCGCGuCGGUGAugUCGGGGAgCGGCg-- -3'
miRNA:   3'- gGUGCuGCCACU--GGUCCCU-GUCGagg -5'
16218 5' -57 NC_004065.1 + 33729 0.68 0.87717
Target:  5'- -gGCGACGGUGGCUcGGccCAGCgCCu -3'
miRNA:   3'- ggUGCUGCCACUGGuCCcuGUCGaGG- -5'
16218 5' -57 NC_004065.1 + 75784 0.68 0.87717
Target:  5'- -gGCGGCGGUcGGCgAGGGGgAGCg-- -3'
miRNA:   3'- ggUGCUGCCA-CUGgUCCCUgUCGagg -5'
16218 5' -57 NC_004065.1 + 18427 0.68 0.870254
Target:  5'- -aGCGAUGGUagacgagcgaGACCucGGACAGCcgCCg -3'
miRNA:   3'- ggUGCUGCCA----------CUGGucCCUGUCGa-GG- -5'
16218 5' -57 NC_004065.1 + 195656 0.68 0.870254
Target:  5'- uCUugGGggguaaacUGGUGACCugaucgGGGGAaGGCUCCu -3'
miRNA:   3'- -GGugCU--------GCCACUGG------UCCCUgUCGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.