miRNA display CGI


Results 101 - 120 of 134 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16218 5' -57 NC_004065.1 + 53855 0.7 0.782669
Target:  5'- uUCGCGGCGGUcgcGCC-GGGAUGGCcacUCCg -3'
miRNA:   3'- -GGUGCUGCCAc--UGGuCCCUGUCG---AGG- -5'
16218 5' -57 NC_004065.1 + 172076 0.7 0.799121
Target:  5'- uCCAagggggcUGugGGUGgagggGCCGGGGgagGCGGCUCUg -3'
miRNA:   3'- -GGU-------GCugCCAC-----UGGUCCC---UGUCGAGG- -5'
16218 5' -57 NC_004065.1 + 30500 0.7 0.824075
Target:  5'- -gGCGACGGcguuggaUGAuuCCGGGGGC-GUUCCg -3'
miRNA:   3'- ggUGCUGCC-------ACU--GGUCCCUGuCGAGG- -5'
16218 5' -57 NC_004065.1 + 102547 0.7 0.808424
Target:  5'- uCCuCGuCGGUGgcGCCGGGGuCGGgUCCc -3'
miRNA:   3'- -GGuGCuGCCAC--UGGUCCCuGUCgAGG- -5'
16218 5' -57 NC_004065.1 + 28391 0.7 0.81673
Target:  5'- aCCGgGACaccggGGUGuuccaCGGGGcGCAGCUCCu -3'
miRNA:   3'- -GGUgCUG-----CCACug---GUCCC-UGUCGAGG- -5'
16218 5' -57 NC_004065.1 + 194625 0.7 0.797412
Target:  5'- aCGCGAgGGgggagcuguugcgcUGcGCCAGGGcgugcaaugGCAGCUCCu -3'
miRNA:   3'- gGUGCUgCC--------------AC-UGGUCCC---------UGUCGAGG- -5'
16218 5' -57 NC_004065.1 + 152308 0.71 0.746653
Target:  5'- gCgGCGGCGGUG-CCggcGGGGACgaugacGGCUUCg -3'
miRNA:   3'- -GgUGCUGCCACuGG---UCCCUG------UCGAGG- -5'
16218 5' -57 NC_004065.1 + 96275 0.71 0.728068
Target:  5'- -gACGGCGGggcGGCCAGGGGCGucacggacGCcgUCCa -3'
miRNA:   3'- ggUGCUGCCa--CUGGUCCCUGU--------CG--AGG- -5'
16218 5' -57 NC_004065.1 + 197152 0.71 0.773829
Target:  5'- cUCGcCGGCGcGccucucGACCAGGGACgccAGCUCCc -3'
miRNA:   3'- -GGU-GCUGC-Ca-----CUGGUCCCUG---UCGAGG- -5'
16218 5' -57 NC_004065.1 + 113771 0.71 0.773829
Target:  5'- gCGCGGCGGcagacGACCGacucGGGCGGCUUCu -3'
miRNA:   3'- gGUGCUGCCa----CUGGUc---CCUGUCGAGG- -5'
16218 5' -57 NC_004065.1 + 161844 0.71 0.737402
Target:  5'- -aGCGGCGG-GGCC---GACAGCUCCg -3'
miRNA:   3'- ggUGCUGCCaCUGGuccCUGUCGAGG- -5'
16218 5' -57 NC_004065.1 + 155833 0.71 0.746653
Target:  5'- uUCGCGACGGUGcGCUGGaGGGCGGUcaUCg -3'
miRNA:   3'- -GGUGCUGCCAC-UGGUC-CCUGUCG--AGg -5'
16218 5' -57 NC_004065.1 + 142763 0.72 0.687178
Target:  5'- cCCGCGACgacgacggccugcuGGUGguggcGCCGGGGGCGGCcaUCUu -3'
miRNA:   3'- -GGUGCUG--------------CCAC-----UGGUCCCUGUCG--AGG- -5'
16218 5' -57 NC_004065.1 + 74570 0.72 0.690063
Target:  5'- gCUugGAgaGG-GGCCAGGGACAGUuggugCCg -3'
miRNA:   3'- -GGugCUg-CCaCUGGUCCCUGUCGa----GG- -5'
16218 5' -57 NC_004065.1 + 101882 0.72 0.699649
Target:  5'- -gACGACGac-GCCGGGG-CGGCUCCu -3'
miRNA:   3'- ggUGCUGCcacUGGUCCCuGUCGAGG- -5'
16218 5' -57 NC_004065.1 + 182502 0.72 0.699649
Target:  5'- aUugGGCGGUGGuCCcaauAGGGGCGGUggUCCc -3'
miRNA:   3'- gGugCUGCCACU-GG----UCCCUGUCG--AGG- -5'
16218 5' -57 NC_004065.1 + 116001 0.72 0.71866
Target:  5'- uCCGcCGAC-GUGcGCCgcGGGGGCAGCUCUc -3'
miRNA:   3'- -GGU-GCUGcCAC-UGG--UCCCUGUCGAGG- -5'
16218 5' -57 NC_004065.1 + 43779 0.72 0.680433
Target:  5'- aCCuguuCGGgGGccaGGCCAGGGGCAgcaucGCUCCa -3'
miRNA:   3'- -GGu---GCUgCCa--CUGGUCCCUGU-----CGAGG- -5'
16218 5' -57 NC_004065.1 + 34513 0.72 0.680433
Target:  5'- gCugGACGG-GACCGGGcgcucuGACgcgGGCUCCc -3'
miRNA:   3'- gGugCUGCCaCUGGUCC------CUG---UCGAGG- -5'
16218 5' -57 NC_004065.1 + 5026 0.72 0.699649
Target:  5'- aCCA-GACGGUGuACUuGGGuCAGCUCg -3'
miRNA:   3'- -GGUgCUGCCAC-UGGuCCCuGUCGAGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.