Results 21 - 40 of 134 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
16218 | 5' | -57 | NC_004065.1 | + | 101882 | 0.72 | 0.699649 |
Target: 5'- -gACGACGac-GCCGGGG-CGGCUCCu -3' miRNA: 3'- ggUGCUGCcacUGGUCCCuGUCGAGG- -5' |
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16218 | 5' | -57 | NC_004065.1 | + | 182502 | 0.72 | 0.699649 |
Target: 5'- aUugGGCGGUGGuCCcaauAGGGGCGGUggUCCc -3' miRNA: 3'- gGugCUGCCACU-GG----UCCCUGUCG--AGG- -5' |
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16218 | 5' | -57 | NC_004065.1 | + | 161844 | 0.71 | 0.737402 |
Target: 5'- -aGCGGCGG-GGCC---GACAGCUCCg -3' miRNA: 3'- ggUGCUGCCaCUGGuccCUGUCGAGG- -5' |
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16218 | 5' | -57 | NC_004065.1 | + | 96275 | 0.71 | 0.728068 |
Target: 5'- -gACGGCGGggcGGCCAGGGGCGucacggacGCcgUCCa -3' miRNA: 3'- ggUGCUGCCa--CUGGUCCCUGU--------CG--AGG- -5' |
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16218 | 5' | -57 | NC_004065.1 | + | 152308 | 0.71 | 0.746653 |
Target: 5'- gCgGCGGCGGUG-CCggcGGGGACgaugacGGCUUCg -3' miRNA: 3'- -GgUGCUGCCACuGG---UCCCUG------UCGAGG- -5' |
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16218 | 5' | -57 | NC_004065.1 | + | 197152 | 0.71 | 0.773829 |
Target: 5'- cUCGcCGGCGcGccucucGACCAGGGACgccAGCUCCc -3' miRNA: 3'- -GGU-GCUGC-Ca-----CUGGUCCCUG---UCGAGG- -5' |
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16218 | 5' | -57 | NC_004065.1 | + | 113771 | 0.71 | 0.773829 |
Target: 5'- gCGCGGCGGcagacGACCGacucGGGCGGCUUCu -3' miRNA: 3'- gGUGCUGCCa----CUGGUc---CCUGUCGAGG- -5' |
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16218 | 5' | -57 | NC_004065.1 | + | 155833 | 0.71 | 0.746653 |
Target: 5'- uUCGCGACGGUGcGCUGGaGGGCGGUcaUCg -3' miRNA: 3'- -GGUGCUGCCAC-UGGUC-CCUGUCG--AGg -5' |
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16218 | 5' | -57 | NC_004065.1 | + | 224347 | 0.7 | 0.822453 |
Target: 5'- aCCACGugaugacgaucagcACGGUGugCAGGauguccauguGGCGGCguUCCg -3' miRNA: 3'- -GGUGC--------------UGCCACugGUCC----------CUGUCG--AGG- -5' |
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16218 | 5' | -57 | NC_004065.1 | + | 53855 | 0.7 | 0.782669 |
Target: 5'- uUCGCGGCGGUcgcGCC-GGGAUGGCcacUCCg -3' miRNA: 3'- -GGUGCUGCCAc--UGGuCCCUGUCG---AGG- -5' |
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16218 | 5' | -57 | NC_004065.1 | + | 133259 | 0.7 | 0.791386 |
Target: 5'- cUCAUGGCGGUGAaucUCGGuGGugAGUUCa -3' miRNA: 3'- -GGUGCUGCCACU---GGUC-CCugUCGAGg -5' |
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16218 | 5' | -57 | NC_004065.1 | + | 139004 | 0.7 | 0.808424 |
Target: 5'- cUCGgGACGGUGGCCAuGGACcGCgUCa -3' miRNA: 3'- -GGUgCUGCCACUGGUcCCUGuCG-AGg -5' |
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16218 | 5' | -57 | NC_004065.1 | + | 194625 | 0.7 | 0.797412 |
Target: 5'- aCGCGAgGGgggagcuguugcgcUGcGCCAGGGcgugcaaugGCAGCUCCu -3' miRNA: 3'- gGUGCUgCC--------------AC-UGGUCCC---------UGUCGAGG- -5' |
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16218 | 5' | -57 | NC_004065.1 | + | 116798 | 0.7 | 0.81673 |
Target: 5'- gCCACGuACGuGuUGGCCGguaccgaccGGGGCAGCguggCCg -3' miRNA: 3'- -GGUGC-UGC-C-ACUGGU---------CCCUGUCGa---GG- -5' |
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16218 | 5' | -57 | NC_004065.1 | + | 28391 | 0.7 | 0.81673 |
Target: 5'- aCCGgGACaccggGGUGuuccaCGGGGcGCAGCUCCu -3' miRNA: 3'- -GGUgCUG-----CCACug---GUCCC-UGUCGAGG- -5' |
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16218 | 5' | -57 | NC_004065.1 | + | 102547 | 0.7 | 0.808424 |
Target: 5'- uCCuCGuCGGUGgcGCCGGGGuCGGgUCCc -3' miRNA: 3'- -GGuGCuGCCAC--UGGUCCCuGUCgAGG- -5' |
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16218 | 5' | -57 | NC_004065.1 | + | 130172 | 0.7 | 0.799974 |
Target: 5'- gCACGGCGGcGAUCGGGGcGCAGacgCUg -3' miRNA: 3'- gGUGCUGCCaCUGGUCCC-UGUCga-GG- -5' |
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16218 | 5' | -57 | NC_004065.1 | + | 172076 | 0.7 | 0.799121 |
Target: 5'- uCCAagggggcUGugGGUGgagggGCCGGGGgagGCGGCUCUg -3' miRNA: 3'- -GGU-------GCugCCAC-----UGGUCCC---UGUCGAGG- -5' |
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16218 | 5' | -57 | NC_004065.1 | + | 131363 | 0.7 | 0.808424 |
Target: 5'- -gACGAC-GUGAUCAGGGuguuACAGCUUUa -3' miRNA: 3'- ggUGCUGcCACUGGUCCC----UGUCGAGG- -5' |
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16218 | 5' | -57 | NC_004065.1 | + | 30500 | 0.7 | 0.824075 |
Target: 5'- -gGCGACGGcguuggaUGAuuCCGGGGGC-GUUCCg -3' miRNA: 3'- ggUGCUGCC-------ACU--GGUCCCUGuCGAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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