miRNA display CGI


Results 41 - 60 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16218 5' -57 NC_004065.1 + 118168 0.69 0.855847
Target:  5'- aCCGCGGCGGcGGCC-GucACGGCUgCCg -3'
miRNA:   3'- -GGUGCUGCCaCUGGuCccUGUCGA-GG- -5'
16218 5' -57 NC_004065.1 + 119317 0.69 0.848367
Target:  5'- --uCGAgGGUGgcggcucucGCCcuGGGCAGCUCCa -3'
miRNA:   3'- gguGCUgCCAC---------UGGucCCUGUCGAGG- -5'
16218 5' -57 NC_004065.1 + 200272 0.69 0.840708
Target:  5'- cCCA-GACGGgauaGCCGGGGA-AGCUCUc -3'
miRNA:   3'- -GGUgCUGCCac--UGGUCCCUgUCGAGG- -5'
16218 5' -57 NC_004065.1 + 79982 0.69 0.832878
Target:  5'- aCACGGuCGccGACCGcGGGCAGUUCCu -3'
miRNA:   3'- gGUGCU-GCcaCUGGUcCCUGUCGAGG- -5'
16218 5' -57 NC_004065.1 + 63400 0.69 0.863145
Target:  5'- uCCGCGcaucgaGCaGGUGAUCAGGcACGucGCUCCg -3'
miRNA:   3'- -GGUGC------UG-CCACUGGUCCcUGU--CGAGG- -5'
16218 5' -57 NC_004065.1 + 210146 0.69 0.848367
Target:  5'- gCgGCGACGGggugGAUCAGGGucucUAGCacgCCa -3'
miRNA:   3'- -GgUGCUGCCa---CUGGUCCCu---GUCGa--GG- -5'
16218 5' -57 NC_004065.1 + 60398 0.69 0.863145
Target:  5'- aCCGCGuCGcG-GACCAGGGACuccAGggCCu -3'
miRNA:   3'- -GGUGCuGC-CaCUGGUCCCUG---UCgaGG- -5'
16218 5' -57 NC_004065.1 + 182890 0.69 0.832878
Target:  5'- cCCACGAgcuCGGaGACCGacGGCAGCUCg -3'
miRNA:   3'- -GGUGCU---GCCaCUGGUccCUGUCGAGg -5'
16218 5' -57 NC_004065.1 + 88970 0.69 0.866012
Target:  5'- gCGUGAUGGUGGCCAccuGGGGCgccuugacgccguccAGCUUCa -3'
miRNA:   3'- gGUGCUGCCACUGGU---CCCUG---------------UCGAGG- -5'
16218 5' -57 NC_004065.1 + 81680 0.69 0.848367
Target:  5'- -gACGGaccgGGUGACCAaGGACGGCgacaCCg -3'
miRNA:   3'- ggUGCUg---CCACUGGUcCCUGUCGa---GG- -5'
16218 5' -57 NC_004065.1 + 148926 0.69 0.855847
Target:  5'- cUCGCgGACGGUGggguACCAGGGAgCuacgguGCUCg -3'
miRNA:   3'- -GGUG-CUGCCAC----UGGUCCCU-Gu-----CGAGg -5'
16218 5' -57 NC_004065.1 + 120488 0.69 0.862424
Target:  5'- -gACGACGGUGucgugcCCGGGGuagACGgugaccuGCUCCa -3'
miRNA:   3'- ggUGCUGCCACu-----GGUCCC---UGU-------CGAGG- -5'
16218 5' -57 NC_004065.1 + 129894 0.69 0.840708
Target:  5'- gCUGCGGCGGacccUGAUCGGGGccugGCGGCaCCu -3'
miRNA:   3'- -GGUGCUGCC----ACUGGUCCC----UGUCGaGG- -5'
16218 5' -57 NC_004065.1 + 59938 0.68 0.894842
Target:  5'- gCGCGGCcagaagcccggaguGGUGcccGCCAGGuuGGCGGCUUCg -3'
miRNA:   3'- gGUGCUG--------------CCAC---UGGUCC--CUGUCGAGG- -5'
16218 5' -57 NC_004065.1 + 118028 0.68 0.896713
Target:  5'- uCC-CGACGGagGAUCAGGcGGCccuGCUCg -3'
miRNA:   3'- -GGuGCUGCCa-CUGGUCC-CUGu--CGAGg -5'
16218 5' -57 NC_004065.1 + 135368 0.68 0.883887
Target:  5'- aCGCGGCGaGUucuUCAGGGACGGUgacgcgCCg -3'
miRNA:   3'- gGUGCUGC-CAcu-GGUCCCUGUCGa-----GG- -5'
16218 5' -57 NC_004065.1 + 104158 0.68 0.902815
Target:  5'- uCCGCGGCGGUG-UCGGucGCcGCUUCg -3'
miRNA:   3'- -GGUGCUGCCACuGGUCccUGuCGAGG- -5'
16218 5' -57 NC_004065.1 + 174324 0.68 0.902815
Target:  5'- cCCGCGAauGcGAUCAGGGAgauaacguaguCAGgUCCg -3'
miRNA:   3'- -GGUGCUgcCaCUGGUCCCU-----------GUCgAGG- -5'
16218 5' -57 NC_004065.1 + 18427 0.68 0.870254
Target:  5'- -aGCGAUGGUagacgagcgaGACCucGGACAGCcgCCg -3'
miRNA:   3'- ggUGCUGCCA----------CUGGucCCUGUCGa-GG- -5'
16218 5' -57 NC_004065.1 + 150713 0.68 0.890403
Target:  5'- aCCGcCGcCGGUGGgaggcCCAGGccgucGACAGCUCg -3'
miRNA:   3'- -GGU-GCuGCCACU-----GGUCC-----CUGUCGAGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.