Results 61 - 80 of 134 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
16218 | 5' | -57 | NC_004065.1 | + | 174324 | 0.68 | 0.902815 |
Target: 5'- cCCGCGAauGcGAUCAGGGAgauaacguaguCAGgUCCg -3' miRNA: 3'- -GGUGCUgcCaCUGGUCCCU-----------GUCgAGG- -5' |
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16218 | 5' | -57 | NC_004065.1 | + | 59938 | 0.68 | 0.894842 |
Target: 5'- gCGCGGCcagaagcccggaguGGUGcccGCCAGGuuGGCGGCUUCg -3' miRNA: 3'- gGUGCUG--------------CCAC---UGGUCC--CUGUCGAGG- -5' |
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16218 | 5' | -57 | NC_004065.1 | + | 149308 | 0.68 | 0.883887 |
Target: 5'- uUCACGGgGGUagcGGCC-GGGAU-GCUCCc -3' miRNA: 3'- -GGUGCUgCCA---CUGGuCCCUGuCGAGG- -5' |
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16218 | 5' | -57 | NC_004065.1 | + | 195656 | 0.68 | 0.870254 |
Target: 5'- uCUugGGggguaaacUGGUGACCugaucgGGGGAaGGCUCCu -3' miRNA: 3'- -GGugCU--------GCCACUGG------UCCCUgUCGAGG- -5' |
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16218 | 5' | -57 | NC_004065.1 | + | 101392 | 0.68 | 0.892952 |
Target: 5'- -gACGGCGGUccccuGACCuccgccaacgaccguGGGGGCGGCUg- -3' miRNA: 3'- ggUGCUGCCA-----CUGG---------------UCCCUGUCGAgg -5' |
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16218 | 5' | -57 | NC_004065.1 | + | 19798 | 0.68 | 0.902214 |
Target: 5'- uCCGCGGuCGucucGUGGCacaGGGGACAcggucucaagcacGCUCCu -3' miRNA: 3'- -GGUGCU-GC----CACUGg--UCCCUGU-------------CGAGG- -5' |
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16218 | 5' | -57 | NC_004065.1 | + | 16896 | 0.68 | 0.902815 |
Target: 5'- gCCACuACGGUGACCacgcAGGGAUacacgacuAGCaugaaguuggcgUCCa -3' miRNA: 3'- -GGUGcUGCCACUGG----UCCCUG--------UCG------------AGG- -5' |
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16218 | 5' | -57 | NC_004065.1 | + | 195089 | 0.68 | 0.883887 |
Target: 5'- gCGCGGCGcaGACCcccAGGGGCgucAGCUCg -3' miRNA: 3'- gGUGCUGCcaCUGG---UCCCUG---UCGAGg -5' |
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16218 | 5' | -57 | NC_004065.1 | + | 61419 | 0.68 | 0.881893 |
Target: 5'- -gACGACGGUcGAguagaggccccuacCCAGGGcCGGC-CCg -3' miRNA: 3'- ggUGCUGCCA-CU--------------GGUCCCuGUCGaGG- -5' |
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16218 | 5' | -57 | NC_004065.1 | + | 67654 | 0.68 | 0.87717 |
Target: 5'- aCGCGuCGGUGAugUCGGGGAgCGGCg-- -3' miRNA: 3'- gGUGCuGCCACU--GGUCCCU-GUCGagg -5' |
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16218 | 5' | -57 | NC_004065.1 | + | 33729 | 0.68 | 0.87717 |
Target: 5'- -gGCGACGGUGGCUcGGccCAGCgCCu -3' miRNA: 3'- ggUGCUGCCACUGGuCCcuGUCGaGG- -5' |
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16218 | 5' | -57 | NC_004065.1 | + | 75784 | 0.68 | 0.87717 |
Target: 5'- -gGCGGCGGUcGGCgAGGGGgAGCg-- -3' miRNA: 3'- ggUGCUGCCA-CUGgUCCCUgUCGagg -5' |
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16218 | 5' | -57 | NC_004065.1 | + | 118028 | 0.68 | 0.896713 |
Target: 5'- uCC-CGACGGagGAUCAGGcGGCccuGCUCg -3' miRNA: 3'- -GGuGCUGCCa-CUGGUCC-CUGu--CGAGg -5' |
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16218 | 5' | -57 | NC_004065.1 | + | 195273 | 0.67 | 0.908705 |
Target: 5'- gCC-CGGCGGgaaacugagGGCCAGGuGGaAGCUCUu -3' miRNA: 3'- -GGuGCUGCCa--------CUGGUCC-CUgUCGAGG- -5' |
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16218 | 5' | -57 | NC_004065.1 | + | 127703 | 0.67 | 0.914382 |
Target: 5'- aCCACGcACGuGUu-UCGGGGGCuGCUCUc -3' miRNA: 3'- -GGUGC-UGC-CAcuGGUCCCUGuCGAGG- -5' |
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16218 | 5' | -57 | NC_004065.1 | + | 117146 | 0.67 | 0.934934 |
Target: 5'- cUCAgGACGGUGAaCGGcaccGACAGCgCCg -3' miRNA: 3'- -GGUgCUGCCACUgGUCc---CUGUCGaGG- -5' |
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16218 | 5' | -57 | NC_004065.1 | + | 42132 | 0.67 | 0.930121 |
Target: 5'- gCACGACGGgGACacgccGGACAGCg-- -3' miRNA: 3'- gGUGCUGCCaCUGguc--CCUGUCGagg -5' |
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16218 | 5' | -57 | NC_004065.1 | + | 148823 | 0.67 | 0.934463 |
Target: 5'- uCCGCG-CGGU-ACUgcgcguuGGGGAuCAGCUCUc -3' miRNA: 3'- -GGUGCuGCCAcUGG-------UCCCU-GUCGAGG- -5' |
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16218 | 5' | -57 | NC_004065.1 | + | 37869 | 0.67 | 0.934934 |
Target: 5'- gCgACGGCGGUGAUCGGcacGAU-GUUCCg -3' miRNA: 3'- -GgUGCUGCCACUGGUCc--CUGuCGAGG- -5' |
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16218 | 5' | -57 | NC_004065.1 | + | 200017 | 0.67 | 0.934934 |
Target: 5'- gCACcGCGGUcgUCAGGGGCAGgUgCCg -3' miRNA: 3'- gGUGcUGCCAcuGGUCCCUGUCgA-GG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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