Results 41 - 60 of 134 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
16218 | 5' | -57 | NC_004065.1 | + | 182890 | 0.69 | 0.832878 |
Target: 5'- cCCACGAgcuCGGaGACCGacGGCAGCUCg -3' miRNA: 3'- -GGUGCU---GCCaCUGGUccCUGUCGAGg -5' |
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16218 | 5' | -57 | NC_004065.1 | + | 79982 | 0.69 | 0.832878 |
Target: 5'- aCACGGuCGccGACCGcGGGCAGUUCCu -3' miRNA: 3'- gGUGCU-GCcaCUGGUcCCUGUCGAGG- -5' |
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16218 | 5' | -57 | NC_004065.1 | + | 129894 | 0.69 | 0.840708 |
Target: 5'- gCUGCGGCGGacccUGAUCGGGGccugGCGGCaCCu -3' miRNA: 3'- -GGUGCUGCC----ACUGGUCCC----UGUCGaGG- -5' |
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16218 | 5' | -57 | NC_004065.1 | + | 200272 | 0.69 | 0.840708 |
Target: 5'- cCCA-GACGGgauaGCCGGGGA-AGCUCUc -3' miRNA: 3'- -GGUgCUGCCac--UGGUCCCUgUCGAGG- -5' |
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16218 | 5' | -57 | NC_004065.1 | + | 119317 | 0.69 | 0.848367 |
Target: 5'- --uCGAgGGUGgcggcucucGCCcuGGGCAGCUCCa -3' miRNA: 3'- gguGCUgCCAC---------UGGucCCUGUCGAGG- -5' |
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16218 | 5' | -57 | NC_004065.1 | + | 210146 | 0.69 | 0.848367 |
Target: 5'- gCgGCGACGGggugGAUCAGGGucucUAGCacgCCa -3' miRNA: 3'- -GgUGCUGCCa---CUGGUCCCu---GUCGa--GG- -5' |
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16218 | 5' | -57 | NC_004065.1 | + | 81680 | 0.69 | 0.848367 |
Target: 5'- -gACGGaccgGGUGACCAaGGACGGCgacaCCg -3' miRNA: 3'- ggUGCUg---CCACUGGUcCCUGUCGa---GG- -5' |
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16218 | 5' | -57 | NC_004065.1 | + | 148926 | 0.69 | 0.855847 |
Target: 5'- cUCGCgGACGGUGggguACCAGGGAgCuacgguGCUCg -3' miRNA: 3'- -GGUG-CUGCCAC----UGGUCCCU-Gu-----CGAGg -5' |
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16218 | 5' | -57 | NC_004065.1 | + | 118168 | 0.69 | 0.855847 |
Target: 5'- aCCGCGGCGGcGGCC-GucACGGCUgCCg -3' miRNA: 3'- -GGUGCUGCCaCUGGuCccUGUCGA-GG- -5' |
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16218 | 5' | -57 | NC_004065.1 | + | 120488 | 0.69 | 0.862424 |
Target: 5'- -gACGACGGUGucgugcCCGGGGuagACGgugaccuGCUCCa -3' miRNA: 3'- ggUGCUGCCACu-----GGUCCC---UGU-------CGAGG- -5' |
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16218 | 5' | -57 | NC_004065.1 | + | 60398 | 0.69 | 0.863145 |
Target: 5'- aCCGCGuCGcG-GACCAGGGACuccAGggCCu -3' miRNA: 3'- -GGUGCuGC-CaCUGGUCCCUG---UCgaGG- -5' |
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16218 | 5' | -57 | NC_004065.1 | + | 63400 | 0.69 | 0.863145 |
Target: 5'- uCCGCGcaucgaGCaGGUGAUCAGGcACGucGCUCCg -3' miRNA: 3'- -GGUGC------UG-CCACUGGUCCcUGU--CGAGG- -5' |
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16218 | 5' | -57 | NC_004065.1 | + | 88970 | 0.69 | 0.866012 |
Target: 5'- gCGUGAUGGUGGCCAccuGGGGCgccuugacgccguccAGCUUCa -3' miRNA: 3'- gGUGCUGCCACUGGU---CCCUG---------------UCGAGG- -5' |
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16218 | 5' | -57 | NC_004065.1 | + | 18427 | 0.68 | 0.870254 |
Target: 5'- -aGCGAUGGUagacgagcgaGACCucGGACAGCcgCCg -3' miRNA: 3'- ggUGCUGCCA----------CUGGucCCUGUCGa-GG- -5' |
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16218 | 5' | -57 | NC_004065.1 | + | 195656 | 0.68 | 0.870254 |
Target: 5'- uCUugGGggguaaacUGGUGACCugaucgGGGGAaGGCUCCu -3' miRNA: 3'- -GGugCU--------GCCACUGG------UCCCUgUCGAGG- -5' |
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16218 | 5' | -57 | NC_004065.1 | + | 38200 | 0.68 | 0.876487 |
Target: 5'- aCCACGACGGcacUGAuagccCCGGGGGggugggaucccucCGGCUUg -3' miRNA: 3'- -GGUGCUGCC---ACU-----GGUCCCU-------------GUCGAGg -5' |
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16218 | 5' | -57 | NC_004065.1 | + | 98687 | 0.68 | 0.87717 |
Target: 5'- cCCGauCGACGG-GACCcgucauGGGGACgcccAGCUUCu -3' miRNA: 3'- -GGU--GCUGCCaCUGG------UCCCUG----UCGAGG- -5' |
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16218 | 5' | -57 | NC_004065.1 | + | 67654 | 0.68 | 0.87717 |
Target: 5'- aCGCGuCGGUGAugUCGGGGAgCGGCg-- -3' miRNA: 3'- gGUGCuGCCACU--GGUCCCU-GUCGagg -5' |
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16218 | 5' | -57 | NC_004065.1 | + | 33729 | 0.68 | 0.87717 |
Target: 5'- -gGCGACGGUGGCUcGGccCAGCgCCu -3' miRNA: 3'- ggUGCUGCCACUGGuCCcuGUCGaGG- -5' |
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16218 | 5' | -57 | NC_004065.1 | + | 75784 | 0.68 | 0.87717 |
Target: 5'- -gGCGGCGGUcGGCgAGGGGgAGCg-- -3' miRNA: 3'- ggUGCUGCCA-CUGgUCCCUgUCGagg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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