miRNA display CGI


Results 21 - 40 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16218 5' -57 NC_004065.1 + 65314 0.66 0.943915
Target:  5'- cCCGCGugGuGgGACCGGcGGcggcggcggcaGCAGCUgCg -3'
miRNA:   3'- -GGUGCugC-CaCUGGUC-CC-----------UGUCGAgG- -5'
16218 5' -57 NC_004065.1 + 70476 0.66 0.943915
Target:  5'- uUCACGGCGGcGuuCAGGGACA---CCg -3'
miRNA:   3'- -GGUGCUGCCaCugGUCCCUGUcgaGG- -5'
16218 5' -57 NC_004065.1 + 99932 0.66 0.943915
Target:  5'- uCCAUGACGccgGACCGccgcGGcGGCGGCUgCu -3'
miRNA:   3'- -GGUGCUGCca-CUGGU----CC-CUGUCGAgG- -5'
16218 5' -57 NC_004065.1 + 17546 0.66 0.942623
Target:  5'- aCAgGACGGgaacggucgauaucuGCCAGGGACcuauggAGCUCa -3'
miRNA:   3'- gGUgCUGCCac-------------UGGUCCCUG------UCGAGg -5'
16218 5' -57 NC_004065.1 + 28783 0.66 0.939532
Target:  5'- --gUGACGGUGACgGaGGaGAaCAGCUCg -3'
miRNA:   3'- gguGCUGCCACUGgU-CC-CU-GUCGAGg -5'
16218 5' -57 NC_004065.1 + 69104 0.66 0.939532
Target:  5'- gCAUGACGGUGGacgagCAGGacgcGCGGCgcgCCg -3'
miRNA:   3'- gGUGCUGCCACUg----GUCCc---UGUCGa--GG- -5'
16218 5' -57 NC_004065.1 + 75489 0.66 0.939532
Target:  5'- -gGCGGCGGcgagGAUCAGGGcGCAGUg-- -3'
miRNA:   3'- ggUGCUGCCa---CUGGUCCC-UGUCGagg -5'
16218 5' -57 NC_004065.1 + 75354 0.66 0.939532
Target:  5'- uCCuCGACGGUGcCCgAGaGGAgCAGCUg- -3'
miRNA:   3'- -GGuGCUGCCACuGG-UC-CCU-GUCGAgg -5'
16218 5' -57 NC_004065.1 + 164103 0.66 0.939532
Target:  5'- aCgGCGACGGUaaccgaGACCGGGG-CGuCUgCCg -3'
miRNA:   3'- -GgUGCUGCCA------CUGGUCCCuGUcGA-GG- -5'
16218 5' -57 NC_004065.1 + 136668 0.66 0.939082
Target:  5'- -aGCGACGGgcgggucUGGCCGgcggcGGGcCGGCUCg -3'
miRNA:   3'- ggUGCUGCC-------ACUGGU-----CCCuGUCGAGg -5'
16218 5' -57 NC_004065.1 + 207233 0.66 0.938175
Target:  5'- -aGCGACGGUGGCCGGucgugaggacGACgaugguauauuuuuGGCUCUg -3'
miRNA:   3'- ggUGCUGCCACUGGUCc---------CUG--------------UCGAGG- -5'
16218 5' -57 NC_004065.1 + 153219 0.67 0.934934
Target:  5'- gCCGCGACGGcGAUgAacGGuGAUAGCguucgCCg -3'
miRNA:   3'- -GGUGCUGCCaCUGgU--CC-CUGUCGa----GG- -5'
16218 5' -57 NC_004065.1 + 211035 0.67 0.934934
Target:  5'- -uGCGcCGG-GACagCAGGGACAGCagCa -3'
miRNA:   3'- ggUGCuGCCaCUG--GUCCCUGUCGagG- -5'
16218 5' -57 NC_004065.1 + 117146 0.67 0.934934
Target:  5'- cUCAgGACGGUGAaCGGcaccGACAGCgCCg -3'
miRNA:   3'- -GGUgCUGCCACUgGUCc---CUGUCGaGG- -5'
16218 5' -57 NC_004065.1 + 200017 0.67 0.934934
Target:  5'- gCACcGCGGUcgUCAGGGGCAGgUgCCg -3'
miRNA:   3'- gGUGcUGCCAcuGGUCCCUGUCgA-GG- -5'
16218 5' -57 NC_004065.1 + 37869 0.67 0.934934
Target:  5'- gCgACGGCGGUGAUCGGcacGAU-GUUCCg -3'
miRNA:   3'- -GgUGCUGCCACUGGUCc--CUGuCGAGG- -5'
16218 5' -57 NC_004065.1 + 88941 0.67 0.934934
Target:  5'- gCGCGGCGGUagcuGGCCAGGcccgcguaguGcCAGCcCCg -3'
miRNA:   3'- gGUGCUGCCA----CUGGUCC----------CuGUCGaGG- -5'
16218 5' -57 NC_004065.1 + 20128 0.67 0.934934
Target:  5'- uCUggGGCGGguUGACCuGGGAaugGGCUCa -3'
miRNA:   3'- -GGugCUGCC--ACUGGuCCCUg--UCGAGg -5'
16218 5' -57 NC_004065.1 + 32227 0.67 0.934934
Target:  5'- gCCGCGGgcgcUGGUGACCAacGcGGACAccgGCgaUCCg -3'
miRNA:   3'- -GGUGCU----GCCACUGGU--C-CCUGU---CG--AGG- -5'
16218 5' -57 NC_004065.1 + 148823 0.67 0.934463
Target:  5'- uCCGCG-CGGU-ACUgcgcguuGGGGAuCAGCUCUc -3'
miRNA:   3'- -GGUGCuGCCAcUGG-------UCCCU-GUCGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.