Results 41 - 60 of 134 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
16218 | 5' | -57 | NC_004065.1 | + | 55735 | 0.67 | 0.930121 |
Target: 5'- --cUGACGGUGAgCAGGGuccACAuGCuaUCCg -3' miRNA: 3'- gguGCUGCCACUgGUCCC---UGU-CG--AGG- -5' |
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16218 | 5' | -57 | NC_004065.1 | + | 19840 | 0.67 | 0.930121 |
Target: 5'- -aGCGGCGGUG-UC-GGGACgaAGCUgCCg -3' miRNA: 3'- ggUGCUGCCACuGGuCCCUG--UCGA-GG- -5' |
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16218 | 5' | -57 | NC_004065.1 | + | 64784 | 0.67 | 0.930121 |
Target: 5'- gCACaGACagaGGggGACCAGGGAUAauauCUCCa -3' miRNA: 3'- gGUG-CUG---CCa-CUGGUCCCUGUc---GAGG- -5' |
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16218 | 5' | -57 | NC_004065.1 | + | 201323 | 0.67 | 0.930121 |
Target: 5'- -gAUGAUGGUGGCgGGGuGCuGCUUCu -3' miRNA: 3'- ggUGCUGCCACUGgUCCcUGuCGAGG- -5' |
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16218 | 5' | -57 | NC_004065.1 | + | 4041 | 0.67 | 0.930121 |
Target: 5'- aCgGCGAUGGaGACCucGGGACcugguucaagcAGCUUCu -3' miRNA: 3'- -GgUGCUGCCaCUGGu-CCCUG-----------UCGAGG- -5' |
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16218 | 5' | -57 | NC_004065.1 | + | 139892 | 0.67 | 0.930121 |
Target: 5'- -gACGA-GGUGGCCGcGGGGC--CUCCg -3' miRNA: 3'- ggUGCUgCCACUGGU-CCCUGucGAGG- -5' |
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16218 | 5' | -57 | NC_004065.1 | + | 94694 | 0.67 | 0.930121 |
Target: 5'- cUCGCGGCcccUGACCuuGGaGGGCGGCUCg -3' miRNA: 3'- -GGUGCUGcc-ACUGG--UC-CCUGUCGAGg -5' |
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16218 | 5' | -57 | NC_004065.1 | + | 42132 | 0.67 | 0.930121 |
Target: 5'- gCACGACGGgGACacgccGGACAGCg-- -3' miRNA: 3'- gGUGCUGCCaCUGguc--CCUGUCGagg -5' |
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16218 | 5' | -57 | NC_004065.1 | + | 93611 | 0.67 | 0.928634 |
Target: 5'- -gAUGAgGGgGGCCAGGaGACgcaucacguagacgGGCUCCu -3' miRNA: 3'- ggUGCUgCCaCUGGUCC-CUG--------------UCGAGG- -5' |
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16218 | 5' | -57 | NC_004065.1 | + | 135153 | 0.67 | 0.928135 |
Target: 5'- -gACGACGGggacgucgaugacGACgAGGGACuGC-CCg -3' miRNA: 3'- ggUGCUGCCa------------CUGgUCCCUGuCGaGG- -5' |
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16218 | 5' | -57 | NC_004065.1 | + | 142477 | 0.67 | 0.926622 |
Target: 5'- -uGgGGCGGUGgacgcgaGCCAGGGgguggcggucugucgACGGCUCUu -3' miRNA: 3'- ggUgCUGCCAC-------UGGUCCC---------------UGUCGAGG- -5' |
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16218 | 5' | -57 | NC_004065.1 | + | 197781 | 0.67 | 0.925091 |
Target: 5'- uCCgAUGAUGGcGGCgAGuccGACGGCUCCg -3' miRNA: 3'- -GG-UGCUGCCaCUGgUCc--CUGUCGAGG- -5' |
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16218 | 5' | -57 | NC_004065.1 | + | 4419 | 0.67 | 0.925091 |
Target: 5'- gCCACGGCGGgccugacgcUGACCcucGGGCcucgAGCUCg -3' miRNA: 3'- -GGUGCUGCC---------ACUGGuc-CCUG----UCGAGg -5' |
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16218 | 5' | -57 | NC_004065.1 | + | 122819 | 0.67 | 0.925091 |
Target: 5'- -gGCGaACGG-GACgAGGuaucagucGACGGCUCCc -3' miRNA: 3'- ggUGC-UGCCaCUGgUCC--------CUGUCGAGG- -5' |
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16218 | 5' | -57 | NC_004065.1 | + | 212835 | 0.67 | 0.925091 |
Target: 5'- aUCACaACGGUGAUCAGG-AUAGCg-- -3' miRNA: 3'- -GGUGcUGCCACUGGUCCcUGUCGagg -5' |
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16218 | 5' | -57 | NC_004065.1 | + | 169776 | 0.67 | 0.919845 |
Target: 5'- uCCGCGACGGguuuggGAgCGggaacGGGAacgGGCUCUg -3' miRNA: 3'- -GGUGCUGCCa-----CUgGU-----CCCUg--UCGAGG- -5' |
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16218 | 5' | -57 | NC_004065.1 | + | 76063 | 0.67 | 0.919845 |
Target: 5'- aCCGCGACGGcgcaGACaAGucGCAGgCUCCg -3' miRNA: 3'- -GGUGCUGCCa---CUGgUCccUGUC-GAGG- -5' |
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16218 | 5' | -57 | NC_004065.1 | + | 127703 | 0.67 | 0.914382 |
Target: 5'- aCCACGcACGuGUu-UCGGGGGCuGCUCUc -3' miRNA: 3'- -GGUGC-UGC-CAcuGGUCCCUGuCGAGG- -5' |
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16218 | 5' | -57 | NC_004065.1 | + | 139881 | 0.67 | 0.913824 |
Target: 5'- uCCGUGACGGUGGuCCGGGuGAgGGUgaucgcaUCCc -3' miRNA: 3'- -GGUGCUGCCACU-GGUCC-CUgUCG-------AGG- -5' |
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16218 | 5' | -57 | NC_004065.1 | + | 143266 | 0.67 | 0.908705 |
Target: 5'- cCCGCGGCGG-----GGGcGGCAGCUUCa -3' miRNA: 3'- -GGUGCUGCCacuggUCC-CUGUCGAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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