miRNA display CGI


Results 1 - 20 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16218 5' -57 NC_004065.1 + 4041 0.67 0.930121
Target:  5'- aCgGCGAUGGaGACCucGGGACcugguucaagcAGCUUCu -3'
miRNA:   3'- -GgUGCUGCCaCUGGu-CCCUG-----------UCGAGG- -5'
16218 5' -57 NC_004065.1 + 4419 0.67 0.925091
Target:  5'- gCCACGGCGGgccugacgcUGACCcucGGGCcucgAGCUCg -3'
miRNA:   3'- -GGUGCUGCC---------ACUGGuc-CCUG----UCGAGg -5'
16218 5' -57 NC_004065.1 + 5026 0.72 0.699649
Target:  5'- aCCA-GACGGUGuACUuGGGuCAGCUCg -3'
miRNA:   3'- -GGUgCUGCCAC-UGGuCCCuGUCGAGg -5'
16218 5' -57 NC_004065.1 + 16896 0.68 0.902815
Target:  5'- gCCACuACGGUGACCacgcAGGGAUacacgacuAGCaugaaguuggcgUCCa -3'
miRNA:   3'- -GGUGcUGCCACUGG----UCCCUG--------UCG------------AGG- -5'
16218 5' -57 NC_004065.1 + 17546 0.66 0.942623
Target:  5'- aCAgGACGGgaacggucgauaucuGCCAGGGACcuauggAGCUCa -3'
miRNA:   3'- gGUgCUGCCac-------------UGGUCCCUG------UCGAGg -5'
16218 5' -57 NC_004065.1 + 18427 0.68 0.870254
Target:  5'- -aGCGAUGGUagacgagcgaGACCucGGACAGCcgCCg -3'
miRNA:   3'- ggUGCUGCCA----------CUGGucCCUGUCGa-GG- -5'
16218 5' -57 NC_004065.1 + 19798 0.68 0.902214
Target:  5'- uCCGCGGuCGucucGUGGCacaGGGGACAcggucucaagcacGCUCCu -3'
miRNA:   3'- -GGUGCU-GC----CACUGg--UCCCUGU-------------CGAGG- -5'
16218 5' -57 NC_004065.1 + 19840 0.67 0.930121
Target:  5'- -aGCGGCGGUG-UC-GGGACgaAGCUgCCg -3'
miRNA:   3'- ggUGCUGCCACuGGuCCCUG--UCGA-GG- -5'
16218 5' -57 NC_004065.1 + 20128 0.67 0.934934
Target:  5'- uCUggGGCGGguUGACCuGGGAaugGGCUCa -3'
miRNA:   3'- -GGugCUGCC--ACUGGuCCCUg--UCGAGg -5'
16218 5' -57 NC_004065.1 + 28391 0.7 0.81673
Target:  5'- aCCGgGACaccggGGUGuuccaCGGGGcGCAGCUCCu -3'
miRNA:   3'- -GGUgCUG-----CCACug---GUCCC-UGUCGAGG- -5'
16218 5' -57 NC_004065.1 + 28783 0.66 0.939532
Target:  5'- --gUGACGGUGACgGaGGaGAaCAGCUCg -3'
miRNA:   3'- gguGCUGCCACUGgU-CC-CU-GUCGAGg -5'
16218 5' -57 NC_004065.1 + 30079 0.66 0.952046
Target:  5'- -gGCGGCGGUGgaagcgagGCCAGcGGuagcgagagcuGCAGCcCCg -3'
miRNA:   3'- ggUGCUGCCAC--------UGGUC-CC-----------UGUCGaGG- -5'
16218 5' -57 NC_004065.1 + 30500 0.7 0.824075
Target:  5'- -gGCGACGGcguuggaUGAuuCCGGGGGC-GUUCCg -3'
miRNA:   3'- ggUGCUGCC-------ACU--GGUCCCUGuCGAGG- -5'
16218 5' -57 NC_004065.1 + 31076 0.74 0.583346
Target:  5'- cUCGCGGCuGGUGGCCAcGGGCGGCg-- -3'
miRNA:   3'- -GGUGCUG-CCACUGGUcCCUGUCGagg -5'
16218 5' -57 NC_004065.1 + 31461 0.77 0.436304
Target:  5'- -gACGGCGGUaGCCAGGGagaccGCGGCUCg -3'
miRNA:   3'- ggUGCUGCCAcUGGUCCC-----UGUCGAGg -5'
16218 5' -57 NC_004065.1 + 32227 0.67 0.934934
Target:  5'- gCCGCGGgcgcUGGUGACCAacGcGGACAccgGCgaUCCg -3'
miRNA:   3'- -GGUGCU----GCCACUGGU--C-CCUGU---CG--AGG- -5'
16218 5' -57 NC_004065.1 + 33729 0.68 0.87717
Target:  5'- -gGCGACGGUGGCUcGGccCAGCgCCu -3'
miRNA:   3'- ggUGCUGCCACUGGuCCcuGUCGaGG- -5'
16218 5' -57 NC_004065.1 + 34513 0.72 0.680433
Target:  5'- gCugGACGG-GACCGGGcgcucuGACgcgGGCUCCc -3'
miRNA:   3'- gGugCUGCCaCUGGUCC------CUG---UCGAGG- -5'
16218 5' -57 NC_004065.1 + 35619 0.66 0.955432
Target:  5'- uCCACGGCGGcGGCggcggCGGGGAUgucaucggcgacaGGgUCCc -3'
miRNA:   3'- -GGUGCUGCCaCUG-----GUCCCUG-------------UCgAGG- -5'
16218 5' -57 NC_004065.1 + 37869 0.67 0.934934
Target:  5'- gCgACGGCGGUGAUCGGcacGAU-GUUCCg -3'
miRNA:   3'- -GgUGCUGCCACUGGUCc--CUGuCGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.