miRNA display CGI


Results 21 - 40 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16218 5' -57 NC_004065.1 + 38200 0.68 0.876487
Target:  5'- aCCACGACGGcacUGAuagccCCGGGGGggugggaucccucCGGCUUg -3'
miRNA:   3'- -GGUGCUGCC---ACU-----GGUCCCU-------------GUCGAGg -5'
16218 5' -57 NC_004065.1 + 42132 0.67 0.930121
Target:  5'- gCACGACGGgGACacgccGGACAGCg-- -3'
miRNA:   3'- gGUGCUGCCaCUGguc--CCUGUCGagg -5'
16218 5' -57 NC_004065.1 + 43779 0.72 0.680433
Target:  5'- aCCuguuCGGgGGccaGGCCAGGGGCAgcaucGCUCCa -3'
miRNA:   3'- -GGu---GCUgCCa--CUGGUCCCUGU-----CGAGG- -5'
16218 5' -57 NC_004065.1 + 44525 0.66 0.952046
Target:  5'- gCGCGAUGuu-ACCGGGGACGGUggcggcgcugccUCCc -3'
miRNA:   3'- gGUGCUGCcacUGGUCCCUGUCG------------AGG- -5'
16218 5' -57 NC_004065.1 + 53855 0.7 0.782669
Target:  5'- uUCGCGGCGGUcgcGCC-GGGAUGGCcacUCCg -3'
miRNA:   3'- -GGUGCUGCCAc--UGGuCCCUGUCG---AGG- -5'
16218 5' -57 NC_004065.1 + 55735 0.67 0.930121
Target:  5'- --cUGACGGUGAgCAGGGuccACAuGCuaUCCg -3'
miRNA:   3'- gguGCUGCCACUgGUCCC---UGU-CG--AGG- -5'
16218 5' -57 NC_004065.1 + 59938 0.68 0.894842
Target:  5'- gCGCGGCcagaagcccggaguGGUGcccGCCAGGuuGGCGGCUUCg -3'
miRNA:   3'- gGUGCUG--------------CCAC---UGGUCC--CUGUCGAGG- -5'
16218 5' -57 NC_004065.1 + 60398 0.69 0.863145
Target:  5'- aCCGCGuCGcG-GACCAGGGACuccAGggCCu -3'
miRNA:   3'- -GGUGCuGC-CaCUGGUCCCUG---UCgaGG- -5'
16218 5' -57 NC_004065.1 + 61419 0.68 0.881893
Target:  5'- -gACGACGGUcGAguagaggccccuacCCAGGGcCGGC-CCg -3'
miRNA:   3'- ggUGCUGCCA-CU--------------GGUCCCuGUCGaGG- -5'
16218 5' -57 NC_004065.1 + 62366 0.66 0.948086
Target:  5'- uCgACGGCGGUGGCggCGGGGguggugGCGGCg-- -3'
miRNA:   3'- -GgUGCUGCCACUG--GUCCC------UGUCGagg -5'
16218 5' -57 NC_004065.1 + 63400 0.69 0.863145
Target:  5'- uCCGCGcaucgaGCaGGUGAUCAGGcACGucGCUCCg -3'
miRNA:   3'- -GGUGC------UG-CCACUGGUCCcUGU--CGAGG- -5'
16218 5' -57 NC_004065.1 + 64784 0.67 0.930121
Target:  5'- gCACaGACagaGGggGACCAGGGAUAauauCUCCa -3'
miRNA:   3'- gGUG-CUG---CCa-CUGGUCCCUGUc---GAGG- -5'
16218 5' -57 NC_004065.1 + 65314 0.66 0.943915
Target:  5'- cCCGCGugGuGgGACCGGcGGcggcggcggcaGCAGCUgCg -3'
miRNA:   3'- -GGUGCugC-CaCUGGUC-CC-----------UGUCGAgG- -5'
16218 5' -57 NC_004065.1 + 67282 0.66 0.948086
Target:  5'- gCACGGCGGagacgcagGACCugGGGGGCuacaagugccugGGCaUCCu -3'
miRNA:   3'- gGUGCUGCCa-------CUGG--UCCCUG------------UCG-AGG- -5'
16218 5' -57 NC_004065.1 + 67654 0.68 0.87717
Target:  5'- aCGCGuCGGUGAugUCGGGGAgCGGCg-- -3'
miRNA:   3'- gGUGCuGCCACU--GGUCCCU-GUCGagg -5'
16218 5' -57 NC_004065.1 + 68237 0.66 0.952046
Target:  5'- gCGuCGGCGGUGACgAGgacGGAcCGGCUgCu -3'
miRNA:   3'- gGU-GCUGCCACUGgUC---CCU-GUCGAgG- -5'
16218 5' -57 NC_004065.1 + 69104 0.66 0.939532
Target:  5'- gCAUGACGGUGGacgagCAGGacgcGCGGCgcgCCg -3'
miRNA:   3'- gGUGCUGCCACUg----GUCCc---UGUCGa--GG- -5'
16218 5' -57 NC_004065.1 + 70476 0.66 0.943915
Target:  5'- uUCACGGCGGcGuuCAGGGACA---CCg -3'
miRNA:   3'- -GGUGCUGCCaCugGUCCCUGUcgaGG- -5'
16218 5' -57 NC_004065.1 + 74093 0.66 0.948086
Target:  5'- gCACGACGGUG-CCGaa-ACAGgUCCu -3'
miRNA:   3'- gGUGCUGCCACuGGUcccUGUCgAGG- -5'
16218 5' -57 NC_004065.1 + 74570 0.72 0.690063
Target:  5'- gCUugGAgaGG-GGCCAGGGACAGUuggugCCg -3'
miRNA:   3'- -GGugCUg-CCaCUGGUCCCUGUCGa----GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.