Results 61 - 80 of 134 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16218 | 5' | -57 | NC_004065.1 | + | 106340 | 0.66 | 0.947678 |
Target: 5'- uCCGCGuucGCGGUagcuccucgacagGACaCAGGGACuccuGCggUCCa -3' miRNA: 3'- -GGUGC---UGCCA-------------CUG-GUCCCUGu---CG--AGG- -5' |
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16218 | 5' | -57 | NC_004065.1 | + | 108944 | 0.66 | 0.948086 |
Target: 5'- cCUGCGGCaGUacgccgacGACCuGGGGCAcgacgccagGCUCCg -3' miRNA: 3'- -GGUGCUGcCA--------CUGGuCCCUGU---------CGAGG- -5' |
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16218 | 5' | -57 | NC_004065.1 | + | 109124 | 0.66 | 0.955432 |
Target: 5'- -gACGGaGGUGG-CGGGGACGGCgggugacggcgguUCCg -3' miRNA: 3'- ggUGCUgCCACUgGUCCCUGUCG-------------AGG- -5' |
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16218 | 5' | -57 | NC_004065.1 | + | 113407 | 0.76 | 0.489264 |
Target: 5'- cUCGCGACGucGUGGCCAGGGagcugcgcagaGCGGCggCCg -3' miRNA: 3'- -GGUGCUGC--CACUGGUCCC-----------UGUCGa-GG- -5' |
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16218 | 5' | -57 | NC_004065.1 | + | 113771 | 0.71 | 0.773829 |
Target: 5'- gCGCGGCGGcagacGACCGacucGGGCGGCUUCu -3' miRNA: 3'- gGUGCUGCCa----CUGGUc---CCUGUCGAGG- -5' |
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16218 | 5' | -57 | NC_004065.1 | + | 114868 | 0.74 | 0.593016 |
Target: 5'- gCgACGACGGUGccGCCGGccGGCGGUUCCg -3' miRNA: 3'- -GgUGCUGCCAC--UGGUCc-CUGUCGAGG- -5' |
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16218 | 5' | -57 | NC_004065.1 | + | 116001 | 0.72 | 0.71866 |
Target: 5'- uCCGcCGAC-GUGcGCCgcGGGGGCAGCUCUc -3' miRNA: 3'- -GGU-GCUGcCAC-UGG--UCCCUGUCGAGG- -5' |
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16218 | 5' | -57 | NC_004065.1 | + | 116798 | 0.7 | 0.81673 |
Target: 5'- gCCACGuACGuGuUGGCCGguaccgaccGGGGCAGCguggCCg -3' miRNA: 3'- -GGUGC-UGC-C-ACUGGU---------CCCUGUCGa---GG- -5' |
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16218 | 5' | -57 | NC_004065.1 | + | 117146 | 0.67 | 0.934934 |
Target: 5'- cUCAgGACGGUGAaCGGcaccGACAGCgCCg -3' miRNA: 3'- -GGUgCUGCCACUgGUCc---CUGUCGaGG- -5' |
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16218 | 5' | -57 | NC_004065.1 | + | 118028 | 0.68 | 0.896713 |
Target: 5'- uCC-CGACGGagGAUCAGGcGGCccuGCUCg -3' miRNA: 3'- -GGuGCUGCCa-CUGGUCC-CUGu--CGAGg -5' |
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16218 | 5' | -57 | NC_004065.1 | + | 118168 | 0.69 | 0.855847 |
Target: 5'- aCCGCGGCGGcGGCC-GucACGGCUgCCg -3' miRNA: 3'- -GGUGCUGCCaCUGGuCccUGUCGA-GG- -5' |
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16218 | 5' | -57 | NC_004065.1 | + | 119317 | 0.69 | 0.848367 |
Target: 5'- --uCGAgGGUGgcggcucucGCCcuGGGCAGCUCCa -3' miRNA: 3'- gguGCUgCCAC---------UGGucCCUGUCGAGG- -5' |
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16218 | 5' | -57 | NC_004065.1 | + | 120402 | 0.66 | 0.947678 |
Target: 5'- cCCuCGACGGUGGugggcaccgcggcCCGGGGGuCgAGCgcggCCu -3' miRNA: 3'- -GGuGCUGCCACU-------------GGUCCCU-G-UCGa---GG- -5' |
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16218 | 5' | -57 | NC_004065.1 | + | 120488 | 0.69 | 0.862424 |
Target: 5'- -gACGACGGUGucgugcCCGGGGuagACGgugaccuGCUCCa -3' miRNA: 3'- ggUGCUGCCACu-----GGUCCC---UGU-------CGAGG- -5' |
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16218 | 5' | -57 | NC_004065.1 | + | 122819 | 0.67 | 0.925091 |
Target: 5'- -gGCGaACGG-GACgAGGuaucagucGACGGCUCCc -3' miRNA: 3'- ggUGC-UGCCaCUGgUCC--------CUGUCGAGG- -5' |
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16218 | 5' | -57 | NC_004065.1 | + | 127703 | 0.67 | 0.914382 |
Target: 5'- aCCACGcACGuGUu-UCGGGGGCuGCUCUc -3' miRNA: 3'- -GGUGC-UGC-CAcuGGUCCCUGuCGAGG- -5' |
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16218 | 5' | -57 | NC_004065.1 | + | 129894 | 0.69 | 0.840708 |
Target: 5'- gCUGCGGCGGacccUGAUCGGGGccugGCGGCaCCu -3' miRNA: 3'- -GGUGCUGCC----ACUGGUCCC----UGUCGaGG- -5' |
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16218 | 5' | -57 | NC_004065.1 | + | 130172 | 0.7 | 0.799974 |
Target: 5'- gCACGGCGGcGAUCGGGGcGCAGacgCUg -3' miRNA: 3'- gGUGCUGCCaCUGGUCCC-UGUCga-GG- -5' |
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16218 | 5' | -57 | NC_004065.1 | + | 131363 | 0.7 | 0.808424 |
Target: 5'- -gACGAC-GUGAUCAGGGuguuACAGCUUUa -3' miRNA: 3'- ggUGCUGcCACUGGUCCC----UGUCGAGG- -5' |
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16218 | 5' | -57 | NC_004065.1 | + | 133259 | 0.7 | 0.791386 |
Target: 5'- cUCAUGGCGGUGAaucUCGGuGGugAGUUCa -3' miRNA: 3'- -GGUGCUGCCACU---GGUC-CCugUCGAGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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