miRNA display CGI


Results 1 - 20 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16218 5' -57 NC_004065.1 + 224347 0.7 0.822453
Target:  5'- aCCACGugaugacgaucagcACGGUGugCAGGauguccauguGGCGGCguUCCg -3'
miRNA:   3'- -GGUGC--------------UGCCACugGUCC----------CUGUCG--AGG- -5'
16218 5' -57 NC_004065.1 + 212835 0.67 0.925091
Target:  5'- aUCACaACGGUGAUCAGG-AUAGCg-- -3'
miRNA:   3'- -GGUGcUGCCACUGGUCCcUGUCGagg -5'
16218 5' -57 NC_004065.1 + 211035 0.67 0.934934
Target:  5'- -uGCGcCGG-GACagCAGGGACAGCagCa -3'
miRNA:   3'- ggUGCuGCCaCUG--GUCCCUGUCGagG- -5'
16218 5' -57 NC_004065.1 + 210146 0.69 0.848367
Target:  5'- gCgGCGACGGggugGAUCAGGGucucUAGCacgCCa -3'
miRNA:   3'- -GgUGCUGCCa---CUGGUCCCu---GUCGa--GG- -5'
16218 5' -57 NC_004065.1 + 207620 1.14 0.00215
Target:  5'- gCCACGACGGUGACCAGGGACAGCUCCa -3'
miRNA:   3'- -GGUGCUGCCACUGGUCCCUGUCGAGG- -5'
16218 5' -57 NC_004065.1 + 207233 0.66 0.938175
Target:  5'- -aGCGACGGUGGCCGGucgugaggacGACgaugguauauuuuuGGCUCUg -3'
miRNA:   3'- ggUGCUGCCACUGGUCc---------CUG--------------UCGAGG- -5'
16218 5' -57 NC_004065.1 + 204759 0.77 0.444905
Target:  5'- gCC-CGACa--GGCCGGGGACAGCUCUu -3'
miRNA:   3'- -GGuGCUGccaCUGGUCCCUGUCGAGG- -5'
16218 5' -57 NC_004065.1 + 201413 0.66 0.947678
Target:  5'- gUCGCGGCGG-G-UCGGGaGuggaaccACAGCUCCu -3'
miRNA:   3'- -GGUGCUGCCaCuGGUCC-C-------UGUCGAGG- -5'
16218 5' -57 NC_004065.1 + 201323 0.67 0.930121
Target:  5'- -gAUGAUGGUGGCgGGGuGCuGCUUCu -3'
miRNA:   3'- ggUGCUGCCACUGgUCCcUGuCGAGG- -5'
16218 5' -57 NC_004065.1 + 200786 0.75 0.54504
Target:  5'- gCGCGGCGGUGGCgGGcGACGGCgUCUc -3'
miRNA:   3'- gGUGCUGCCACUGgUCcCUGUCG-AGG- -5'
16218 5' -57 NC_004065.1 + 200272 0.69 0.840708
Target:  5'- cCCA-GACGGgauaGCCGGGGA-AGCUCUc -3'
miRNA:   3'- -GGUgCUGCCac--UGGUCCCUgUCGAGG- -5'
16218 5' -57 NC_004065.1 + 200017 0.67 0.934934
Target:  5'- gCACcGCGGUcgUCAGGGGCAGgUgCCg -3'
miRNA:   3'- gGUGcUGCCAcuGGUCCCUGUCgA-GG- -5'
16218 5' -57 NC_004065.1 + 199222 0.74 0.593016
Target:  5'- aCCGCGACGGUGACgaCAGGuGCAuuGUUCUc -3'
miRNA:   3'- -GGUGCUGCCACUG--GUCCcUGU--CGAGG- -5'
16218 5' -57 NC_004065.1 + 197781 0.67 0.925091
Target:  5'- uCCgAUGAUGGcGGCgAGuccGACGGCUCCg -3'
miRNA:   3'- -GG-UGCUGCCaCUGgUCc--CUGUCGAGG- -5'
16218 5' -57 NC_004065.1 + 197152 0.71 0.773829
Target:  5'- cUCGcCGGCGcGccucucGACCAGGGACgccAGCUCCc -3'
miRNA:   3'- -GGU-GCUGC-Ca-----CUGGUCCCUG---UCGAGG- -5'
16218 5' -57 NC_004065.1 + 195656 0.68 0.870254
Target:  5'- uCUugGGggguaaacUGGUGACCugaucgGGGGAaGGCUCCu -3'
miRNA:   3'- -GGugCU--------GCCACUGG------UCCCUgUCGAGG- -5'
16218 5' -57 NC_004065.1 + 195351 0.66 0.955798
Target:  5'- cCCGCGucuugaaGGUGGCCAacacgauagcGGGAUucCUCCg -3'
miRNA:   3'- -GGUGCug-----CCACUGGU----------CCCUGucGAGG- -5'
16218 5' -57 NC_004065.1 + 195273 0.67 0.908705
Target:  5'- gCC-CGGCGGgaaacugagGGCCAGGuGGaAGCUCUu -3'
miRNA:   3'- -GGuGCUGCCa--------CUGGUCC-CUgUCGAGG- -5'
16218 5' -57 NC_004065.1 + 195089 0.68 0.883887
Target:  5'- gCGCGGCGcaGACCcccAGGGGCgucAGCUCg -3'
miRNA:   3'- gGUGCUGCcaCUGG---UCCCUG---UCGAGg -5'
16218 5' -57 NC_004065.1 + 194854 0.78 0.374239
Target:  5'- aCCACGGCGGcggacacgaucuuccUGACCAGGGuCuugGGCUUCg -3'
miRNA:   3'- -GGUGCUGCC---------------ACUGGUCCCuG---UCGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.