miRNA display CGI


Results 21 - 40 of 134 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16218 5' -57 NC_004065.1 + 194625 0.7 0.797412
Target:  5'- aCGCGAgGGgggagcuguugcgcUGcGCCAGGGcgugcaaugGCAGCUCCu -3'
miRNA:   3'- gGUGCUgCC--------------AC-UGGUCCC---------UGUCGAGG- -5'
16218 5' -57 NC_004065.1 + 182890 0.69 0.832878
Target:  5'- cCCACGAgcuCGGaGACCGacGGCAGCUCg -3'
miRNA:   3'- -GGUGCU---GCCaCUGGUccCUGUCGAGg -5'
16218 5' -57 NC_004065.1 + 182502 0.72 0.699649
Target:  5'- aUugGGCGGUGGuCCcaauAGGGGCGGUggUCCc -3'
miRNA:   3'- gGugCUGCCACU-GG----UCCCUGUCG--AGG- -5'
16218 5' -57 NC_004065.1 + 177492 0.73 0.651357
Target:  5'- gCACGGCGGggccGCCGGGGGuCAGUaUCCc -3'
miRNA:   3'- gGUGCUGCCac--UGGUCCCU-GUCG-AGG- -5'
16218 5' -57 NC_004065.1 + 174324 0.68 0.902815
Target:  5'- cCCGCGAauGcGAUCAGGGAgauaacguaguCAGgUCCg -3'
miRNA:   3'- -GGUGCUgcCaCUGGUCCCU-----------GUCgAGG- -5'
16218 5' -57 NC_004065.1 + 172080 0.72 0.71866
Target:  5'- gCCGCcGCGGUucGAgCGGGGgacguagcGCGGCUCCu -3'
miRNA:   3'- -GGUGcUGCCA--CUgGUCCC--------UGUCGAGG- -5'
16218 5' -57 NC_004065.1 + 172076 0.7 0.799121
Target:  5'- uCCAagggggcUGugGGUGgagggGCCGGGGgagGCGGCUCUg -3'
miRNA:   3'- -GGU-------GCugCCAC-----UGGUCCC---UGUCGAGG- -5'
16218 5' -57 NC_004065.1 + 170358 0.68 0.902815
Target:  5'- -gACGACGaG-GACgAGGuGGCGuGCUCCg -3'
miRNA:   3'- ggUGCUGC-CaCUGgUCC-CUGU-CGAGG- -5'
16218 5' -57 NC_004065.1 + 169854 0.74 0.563149
Target:  5'- aCCGCGACGGgu-UCGGGGACggugacgGGCUCg -3'
miRNA:   3'- -GGUGCUGCCacuGGUCCCUG-------UCGAGg -5'
16218 5' -57 NC_004065.1 + 169776 0.67 0.919845
Target:  5'- uCCGCGACGGguuuggGAgCGggaacGGGAacgGGCUCUg -3'
miRNA:   3'- -GGUGCUGCCa-----CUgGU-----CCCUg--UCGAGG- -5'
16218 5' -57 NC_004065.1 + 164103 0.66 0.939532
Target:  5'- aCgGCGACGGUaaccgaGACCGGGG-CGuCUgCCg -3'
miRNA:   3'- -GgUGCUGCCA------CUGGUCCCuGUcGA-GG- -5'
16218 5' -57 NC_004065.1 + 163483 0.66 0.948086
Target:  5'- uCCGuCGGCGGc-GCCGGuGGcgGCGGCUUCa -3'
miRNA:   3'- -GGU-GCUGCCacUGGUC-CC--UGUCGAGG- -5'
16218 5' -57 NC_004065.1 + 161844 0.71 0.737402
Target:  5'- -aGCGGCGG-GGCC---GACAGCUCCg -3'
miRNA:   3'- ggUGCUGCCaCUGGuccCUGUCGAGG- -5'
16218 5' -57 NC_004065.1 + 155833 0.71 0.746653
Target:  5'- uUCGCGACGGUGcGCUGGaGGGCGGUcaUCg -3'
miRNA:   3'- -GGUGCUGCCAC-UGGUC-CCUGUCG--AGg -5'
16218 5' -57 NC_004065.1 + 153219 0.67 0.934934
Target:  5'- gCCGCGACGGcGAUgAacGGuGAUAGCguucgCCg -3'
miRNA:   3'- -GGUGCUGCCaCUGgU--CC-CUGUCGa----GG- -5'
16218 5' -57 NC_004065.1 + 152308 0.71 0.746653
Target:  5'- gCgGCGGCGGUG-CCggcGGGGACgaugacGGCUUCg -3'
miRNA:   3'- -GgUGCUGCCACuGG---UCCCUG------UCGAGG- -5'
16218 5' -57 NC_004065.1 + 151271 0.66 0.948086
Target:  5'- aCCuCGACuGcGUGAUCAcGGGCAGCaCCg -3'
miRNA:   3'- -GGuGCUG-C-CACUGGUcCCUGUCGaGG- -5'
16218 5' -57 NC_004065.1 + 150713 0.68 0.890403
Target:  5'- aCCGcCGcCGGUGGgaggcCCAGGccgucGACAGCUCg -3'
miRNA:   3'- -GGU-GCuGCCACU-----GGUCC-----CUGUCGAGg -5'
16218 5' -57 NC_004065.1 + 149308 0.68 0.883887
Target:  5'- uUCACGGgGGUagcGGCC-GGGAU-GCUCCc -3'
miRNA:   3'- -GGUGCUgCCA---CUGGuCCCUGuCGAGG- -5'
16218 5' -57 NC_004065.1 + 148926 0.69 0.855847
Target:  5'- cUCGCgGACGGUGggguACCAGGGAgCuacgguGCUCg -3'
miRNA:   3'- -GGUG-CUGCCAC----UGGUCCCU-Gu-----CGAGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.