miRNA display CGI


Results 41 - 60 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16218 5' -57 NC_004065.1 + 148823 0.67 0.934463
Target:  5'- uCCGCG-CGGU-ACUgcgcguuGGGGAuCAGCUCUc -3'
miRNA:   3'- -GGUGCuGCCAcUGG-------UCCCU-GUCGAGG- -5'
16218 5' -57 NC_004065.1 + 143266 0.67 0.908705
Target:  5'- cCCGCGGCGG-----GGGcGGCAGCUUCa -3'
miRNA:   3'- -GGUGCUGCCacuggUCC-CUGUCGAGG- -5'
16218 5' -57 NC_004065.1 + 142853 0.65 0.958302
Target:  5'- aCCGCG-CGGUG--CAGGGGCuccuggacgaccccGGuCUCCa -3'
miRNA:   3'- -GGUGCuGCCACugGUCCCUG--------------UC-GAGG- -5'
16218 5' -57 NC_004065.1 + 142763 0.72 0.687178
Target:  5'- cCCGCGACgacgacggccugcuGGUGguggcGCCGGGGGCGGCcaUCUu -3'
miRNA:   3'- -GGUGCUG--------------CCAC-----UGGUCCCUGUCG--AGG- -5'
16218 5' -57 NC_004065.1 + 142477 0.67 0.926622
Target:  5'- -uGgGGCGGUGgacgcgaGCCAGGGgguggcggucugucgACGGCUCUu -3'
miRNA:   3'- ggUgCUGCCAC-------UGGUCCC---------------UGUCGAGG- -5'
16218 5' -57 NC_004065.1 + 141602 0.66 0.952046
Target:  5'- aCGCGACGGcGgcgggcuccgcuGCCGGcGGugGCGGCUCg -3'
miRNA:   3'- gGUGCUGCCaC------------UGGUC-CC--UGUCGAGg -5'
16218 5' -57 NC_004065.1 + 139892 0.67 0.930121
Target:  5'- -gACGA-GGUGGCCGcGGGGC--CUCCg -3'
miRNA:   3'- ggUGCUgCCACUGGU-CCCUGucGAGG- -5'
16218 5' -57 NC_004065.1 + 139881 0.67 0.913824
Target:  5'- uCCGUGACGGUGGuCCGGGuGAgGGUgaucgcaUCCc -3'
miRNA:   3'- -GGUGCUGCCACU-GGUCC-CUgUCG-------AGG- -5'
16218 5' -57 NC_004065.1 + 139004 0.7 0.808424
Target:  5'- cUCGgGACGGUGGCCAuGGACcGCgUCa -3'
miRNA:   3'- -GGUgCUGCCACUGGUcCCUGuCG-AGg -5'
16218 5' -57 NC_004065.1 + 138129 0.66 0.955798
Target:  5'- aUCGCGuCGGUGAgCAuGGcuACAGCggCCg -3'
miRNA:   3'- -GGUGCuGCCACUgGUcCC--UGUCGa-GG- -5'
16218 5' -57 NC_004065.1 + 136668 0.66 0.939082
Target:  5'- -aGCGACGGgcgggucUGGCCGgcggcGGGcCGGCUCg -3'
miRNA:   3'- ggUGCUGCC-------ACUGGU-----CCCuGUCGAGg -5'
16218 5' -57 NC_004065.1 + 135368 0.68 0.883887
Target:  5'- aCGCGGCGaGUucuUCAGGGACGGUgacgcgCCg -3'
miRNA:   3'- gGUGCUGC-CAcu-GGUCCCUGUCGa-----GG- -5'
16218 5' -57 NC_004065.1 + 135153 0.67 0.928135
Target:  5'- -gACGACGGggacgucgaugacGACgAGGGACuGC-CCg -3'
miRNA:   3'- ggUGCUGCCa------------CUGgUCCCUGuCGaGG- -5'
16218 5' -57 NC_004065.1 + 134150 0.73 0.641628
Target:  5'- gCACGACuguguGGUGGuCCAcacgcaGGACGGCUCCg -3'
miRNA:   3'- gGUGCUG-----CCACU-GGUc-----CCUGUCGAGG- -5'
16218 5' -57 NC_004065.1 + 133259 0.7 0.791386
Target:  5'- cUCAUGGCGGUGAaucUCGGuGGugAGUUCa -3'
miRNA:   3'- -GGUGCUGCCACU---GGUC-CCugUCGAGg -5'
16218 5' -57 NC_004065.1 + 131363 0.7 0.808424
Target:  5'- -gACGAC-GUGAUCAGGGuguuACAGCUUUa -3'
miRNA:   3'- ggUGCUGcCACUGGUCCC----UGUCGAGG- -5'
16218 5' -57 NC_004065.1 + 130172 0.7 0.799974
Target:  5'- gCACGGCGGcGAUCGGGGcGCAGacgCUg -3'
miRNA:   3'- gGUGCUGCCaCUGGUCCC-UGUCga-GG- -5'
16218 5' -57 NC_004065.1 + 129894 0.69 0.840708
Target:  5'- gCUGCGGCGGacccUGAUCGGGGccugGCGGCaCCu -3'
miRNA:   3'- -GGUGCUGCC----ACUGGUCCC----UGUCGaGG- -5'
16218 5' -57 NC_004065.1 + 127703 0.67 0.914382
Target:  5'- aCCACGcACGuGUu-UCGGGGGCuGCUCUc -3'
miRNA:   3'- -GGUGC-UGC-CAcuGGUCCCUGuCGAGG- -5'
16218 5' -57 NC_004065.1 + 122819 0.67 0.925091
Target:  5'- -gGCGaACGG-GACgAGGuaucagucGACGGCUCCc -3'
miRNA:   3'- ggUGC-UGCCaCUGgUCC--------CUGUCGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.