miRNA display CGI


Results 61 - 80 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16218 5' -57 NC_004065.1 + 120488 0.69 0.862424
Target:  5'- -gACGACGGUGucgugcCCGGGGuagACGgugaccuGCUCCa -3'
miRNA:   3'- ggUGCUGCCACu-----GGUCCC---UGU-------CGAGG- -5'
16218 5' -57 NC_004065.1 + 120402 0.66 0.947678
Target:  5'- cCCuCGACGGUGGugggcaccgcggcCCGGGGGuCgAGCgcggCCu -3'
miRNA:   3'- -GGuGCUGCCACU-------------GGUCCCU-G-UCGa---GG- -5'
16218 5' -57 NC_004065.1 + 119317 0.69 0.848367
Target:  5'- --uCGAgGGUGgcggcucucGCCcuGGGCAGCUCCa -3'
miRNA:   3'- gguGCUgCCAC---------UGGucCCUGUCGAGG- -5'
16218 5' -57 NC_004065.1 + 118168 0.69 0.855847
Target:  5'- aCCGCGGCGGcGGCC-GucACGGCUgCCg -3'
miRNA:   3'- -GGUGCUGCCaCUGGuCccUGUCGA-GG- -5'
16218 5' -57 NC_004065.1 + 118028 0.68 0.896713
Target:  5'- uCC-CGACGGagGAUCAGGcGGCccuGCUCg -3'
miRNA:   3'- -GGuGCUGCCa-CUGGUCC-CUGu--CGAGg -5'
16218 5' -57 NC_004065.1 + 117146 0.67 0.934934
Target:  5'- cUCAgGACGGUGAaCGGcaccGACAGCgCCg -3'
miRNA:   3'- -GGUgCUGCCACUgGUCc---CUGUCGaGG- -5'
16218 5' -57 NC_004065.1 + 116798 0.7 0.81673
Target:  5'- gCCACGuACGuGuUGGCCGguaccgaccGGGGCAGCguggCCg -3'
miRNA:   3'- -GGUGC-UGC-C-ACUGGU---------CCCUGUCGa---GG- -5'
16218 5' -57 NC_004065.1 + 116001 0.72 0.71866
Target:  5'- uCCGcCGAC-GUGcGCCgcGGGGGCAGCUCUc -3'
miRNA:   3'- -GGU-GCUGcCAC-UGG--UCCCUGUCGAGG- -5'
16218 5' -57 NC_004065.1 + 114868 0.74 0.593016
Target:  5'- gCgACGACGGUGccGCCGGccGGCGGUUCCg -3'
miRNA:   3'- -GgUGCUGCCAC--UGGUCc-CUGUCGAGG- -5'
16218 5' -57 NC_004065.1 + 113771 0.71 0.773829
Target:  5'- gCGCGGCGGcagacGACCGacucGGGCGGCUUCu -3'
miRNA:   3'- gGUGCUGCCa----CUGGUc---CCUGUCGAGG- -5'
16218 5' -57 NC_004065.1 + 113407 0.76 0.489264
Target:  5'- cUCGCGACGucGUGGCCAGGGagcugcgcagaGCGGCggCCg -3'
miRNA:   3'- -GGUGCUGC--CACUGGUCCC-----------UGUCGa-GG- -5'
16218 5' -57 NC_004065.1 + 109124 0.66 0.955432
Target:  5'- -gACGGaGGUGG-CGGGGACGGCgggugacggcgguUCCg -3'
miRNA:   3'- ggUGCUgCCACUgGUCCCUGUCG-------------AGG- -5'
16218 5' -57 NC_004065.1 + 108944 0.66 0.948086
Target:  5'- cCUGCGGCaGUacgccgacGACCuGGGGCAcgacgccagGCUCCg -3'
miRNA:   3'- -GGUGCUGcCA--------CUGGuCCCUGU---------CGAGG- -5'
16218 5' -57 NC_004065.1 + 106340 0.66 0.947678
Target:  5'- uCCGCGuucGCGGUagcuccucgacagGACaCAGGGACuccuGCggUCCa -3'
miRNA:   3'- -GGUGC---UGCCA-------------CUG-GUCCCUGu---CG--AGG- -5'
16218 5' -57 NC_004065.1 + 104158 0.68 0.902815
Target:  5'- uCCGCGGCGGUG-UCGGucGCcGCUUCg -3'
miRNA:   3'- -GGUGCUGCCACuGGUCccUGuCGAGG- -5'
16218 5' -57 NC_004065.1 + 103610 0.66 0.952046
Target:  5'- aCCGCaGcCGG-GACCGcGGGCAGCUg- -3'
miRNA:   3'- -GGUG-CuGCCaCUGGUcCCUGUCGAgg -5'
16218 5' -57 NC_004065.1 + 102547 0.7 0.808424
Target:  5'- uCCuCGuCGGUGgcGCCGGGGuCGGgUCCc -3'
miRNA:   3'- -GGuGCuGCCAC--UGGUCCCuGUCgAGG- -5'
16218 5' -57 NC_004065.1 + 101882 0.72 0.699649
Target:  5'- -gACGACGac-GCCGGGG-CGGCUCCu -3'
miRNA:   3'- ggUGCUGCcacUGGUCCCuGUCGAGG- -5'
16218 5' -57 NC_004065.1 + 101392 0.68 0.892952
Target:  5'- -gACGGCGGUccccuGACCuccgccaacgaccguGGGGGCGGCUg- -3'
miRNA:   3'- ggUGCUGCCA-----CUGG---------------UCCCUGUCGAgg -5'
16218 5' -57 NC_004065.1 + 99932 0.66 0.943915
Target:  5'- uCCAUGACGccgGACCGccgcGGcGGCGGCUgCu -3'
miRNA:   3'- -GGUGCUGCca-CUGGU----CC-CUGUCGAgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.