miRNA display CGI


Results 81 - 100 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16218 5' -57 NC_004065.1 + 98687 0.68 0.87717
Target:  5'- cCCGauCGACGG-GACCcgucauGGGGACgcccAGCUUCu -3'
miRNA:   3'- -GGU--GCUGCCaCUGG------UCCCUG----UCGAGG- -5'
16218 5' -57 NC_004065.1 + 96275 0.71 0.728068
Target:  5'- -gACGGCGGggcGGCCAGGGGCGucacggacGCcgUCCa -3'
miRNA:   3'- ggUGCUGCCa--CUGGUCCCUGU--------CG--AGG- -5'
16218 5' -57 NC_004065.1 + 94694 0.67 0.930121
Target:  5'- cUCGCGGCcccUGACCuuGGaGGGCGGCUCg -3'
miRNA:   3'- -GGUGCUGcc-ACUGG--UC-CCUGUCGAGg -5'
16218 5' -57 NC_004065.1 + 93611 0.67 0.928634
Target:  5'- -gAUGAgGGgGGCCAGGaGACgcaucacguagacgGGCUCCu -3'
miRNA:   3'- ggUGCUgCCaCUGGUCC-CUG--------------UCGAGG- -5'
16218 5' -57 NC_004065.1 + 90276 0.66 0.952046
Target:  5'- aCCACGACGGgcuccuucuUGAUCugcuuGGGGAugccCGGCagCCg -3'
miRNA:   3'- -GGUGCUGCC---------ACUGG-----UCCCU----GUCGa-GG- -5'
16218 5' -57 NC_004065.1 + 88970 0.69 0.866012
Target:  5'- gCGUGAUGGUGGCCAccuGGGGCgccuugacgccguccAGCUUCa -3'
miRNA:   3'- gGUGCUGCCACUGGU---CCCUG---------------UCGAGG- -5'
16218 5' -57 NC_004065.1 + 88941 0.67 0.934934
Target:  5'- gCGCGGCGGUagcuGGCCAGGcccgcguaguGcCAGCcCCg -3'
miRNA:   3'- gGUGCUGCCA----CUGGUCC----------CuGUCGaGG- -5'
16218 5' -57 NC_004065.1 + 81680 0.69 0.848367
Target:  5'- -gACGGaccgGGUGACCAaGGACGGCgacaCCg -3'
miRNA:   3'- ggUGCUg---CCACUGGUcCCUGUCGa---GG- -5'
16218 5' -57 NC_004065.1 + 79982 0.69 0.832878
Target:  5'- aCACGGuCGccGACCGcGGGCAGUUCCu -3'
miRNA:   3'- gGUGCU-GCcaCUGGUcCCUGUCGAGG- -5'
16218 5' -57 NC_004065.1 + 77415 0.73 0.651357
Target:  5'- aCAUGGCGGUGACCcGGGcGCuGCUg- -3'
miRNA:   3'- gGUGCUGCCACUGGuCCC-UGuCGAgg -5'
16218 5' -57 NC_004065.1 + 76063 0.67 0.919845
Target:  5'- aCCGCGACGGcgcaGACaAGucGCAGgCUCCg -3'
miRNA:   3'- -GGUGCUGCCa---CUGgUCccUGUC-GAGG- -5'
16218 5' -57 NC_004065.1 + 75784 0.68 0.87717
Target:  5'- -gGCGGCGGUcGGCgAGGGGgAGCg-- -3'
miRNA:   3'- ggUGCUGCCA-CUGgUCCCUgUCGagg -5'
16218 5' -57 NC_004065.1 + 75489 0.66 0.939532
Target:  5'- -gGCGGCGGcgagGAUCAGGGcGCAGUg-- -3'
miRNA:   3'- ggUGCUGCCa---CUGGUCCC-UGUCGagg -5'
16218 5' -57 NC_004065.1 + 75354 0.66 0.939532
Target:  5'- uCCuCGACGGUGcCCgAGaGGAgCAGCUg- -3'
miRNA:   3'- -GGuGCUGCCACuGG-UC-CCU-GUCGAgg -5'
16218 5' -57 NC_004065.1 + 74570 0.72 0.690063
Target:  5'- gCUugGAgaGG-GGCCAGGGACAGUuggugCCg -3'
miRNA:   3'- -GGugCUg-CCaCUGGUCCCUGUCGa----GG- -5'
16218 5' -57 NC_004065.1 + 74093 0.66 0.948086
Target:  5'- gCACGACGGUG-CCGaa-ACAGgUCCu -3'
miRNA:   3'- gGUGCUGCCACuGGUcccUGUCgAGG- -5'
16218 5' -57 NC_004065.1 + 70476 0.66 0.943915
Target:  5'- uUCACGGCGGcGuuCAGGGACA---CCg -3'
miRNA:   3'- -GGUGCUGCCaCugGUCCCUGUcgaGG- -5'
16218 5' -57 NC_004065.1 + 69104 0.66 0.939532
Target:  5'- gCAUGACGGUGGacgagCAGGacgcGCGGCgcgCCg -3'
miRNA:   3'- gGUGCUGCCACUg----GUCCc---UGUCGa--GG- -5'
16218 5' -57 NC_004065.1 + 68237 0.66 0.952046
Target:  5'- gCGuCGGCGGUGACgAGgacGGAcCGGCUgCu -3'
miRNA:   3'- gGU-GCUGCCACUGgUC---CCU-GUCGAgG- -5'
16218 5' -57 NC_004065.1 + 67654 0.68 0.87717
Target:  5'- aCGCGuCGGUGAugUCGGGGAgCGGCg-- -3'
miRNA:   3'- gGUGCuGCCACU--GGUCCCU-GUCGagg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.