miRNA display CGI


Results 1 - 20 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16218 5' -57 NC_004065.1 + 131363 0.7 0.808424
Target:  5'- -gACGAC-GUGAUCAGGGuguuACAGCUUUa -3'
miRNA:   3'- ggUGCUGcCACUGGUCCC----UGUCGAGG- -5'
16218 5' -57 NC_004065.1 + 116001 0.72 0.71866
Target:  5'- uCCGcCGAC-GUGcGCCgcGGGGGCAGCUCUc -3'
miRNA:   3'- -GGU-GCUGcCAC-UGG--UCCCUGUCGAGG- -5'
16218 5' -57 NC_004065.1 + 172080 0.72 0.71866
Target:  5'- gCCGCcGCGGUucGAgCGGGGgacguagcGCGGCUCCu -3'
miRNA:   3'- -GGUGcUGCCA--CUgGUCCC--------UGUCGAGG- -5'
16218 5' -57 NC_004065.1 + 96275 0.71 0.728068
Target:  5'- -gACGGCGGggcGGCCAGGGGCGucacggacGCcgUCCa -3'
miRNA:   3'- ggUGCUGCCa--CUGGUCCCUGU--------CG--AGG- -5'
16218 5' -57 NC_004065.1 + 152308 0.71 0.746653
Target:  5'- gCgGCGGCGGUG-CCggcGGGGACgaugacGGCUUCg -3'
miRNA:   3'- -GgUGCUGCCACuGG---UCCCUG------UCGAGG- -5'
16218 5' -57 NC_004065.1 + 197152 0.71 0.773829
Target:  5'- cUCGcCGGCGcGccucucGACCAGGGACgccAGCUCCc -3'
miRNA:   3'- -GGU-GCUGC-Ca-----CUGGUCCCUG---UCGAGG- -5'
16218 5' -57 NC_004065.1 + 113771 0.71 0.773829
Target:  5'- gCGCGGCGGcagacGACCGacucGGGCGGCUUCu -3'
miRNA:   3'- gGUGCUGCCa----CUGGUc---CCUGUCGAGG- -5'
16218 5' -57 NC_004065.1 + 53855 0.7 0.782669
Target:  5'- uUCGCGGCGGUcgcGCC-GGGAUGGCcacUCCg -3'
miRNA:   3'- -GGUGCUGCCAc--UGGuCCCUGUCG---AGG- -5'
16218 5' -57 NC_004065.1 + 133259 0.7 0.791386
Target:  5'- cUCAUGGCGGUGAaucUCGGuGGugAGUUCa -3'
miRNA:   3'- -GGUGCUGCCACU---GGUC-CCugUCGAGg -5'
16218 5' -57 NC_004065.1 + 182502 0.72 0.699649
Target:  5'- aUugGGCGGUGGuCCcaauAGGGGCGGUggUCCc -3'
miRNA:   3'- gGugCUGCCACU-GG----UCCCUGUCG--AGG- -5'
16218 5' -57 NC_004065.1 + 101882 0.72 0.699649
Target:  5'- -gACGACGac-GCCGGGG-CGGCUCCu -3'
miRNA:   3'- ggUGCUGCcacUGGUCCCuGUCGAGG- -5'
16218 5' -57 NC_004065.1 + 74570 0.72 0.690063
Target:  5'- gCUugGAgaGG-GGCCAGGGACAGUuggugCCg -3'
miRNA:   3'- -GGugCUg-CCaCUGGUCCCUGUCGa----GG- -5'
16218 5' -57 NC_004065.1 + 194854 0.78 0.374239
Target:  5'- aCCACGGCGGcggacacgaucuuccUGACCAGGGuCuugGGCUUCg -3'
miRNA:   3'- -GGUGCUGCC---------------ACUGGUCCCuG---UCGAGG- -5'
16218 5' -57 NC_004065.1 + 31461 0.77 0.436304
Target:  5'- -gACGGCGGUaGCCAGGGagaccGCGGCUCg -3'
miRNA:   3'- ggUGCUGCCAcUGGUCCC-----UGUCGAGg -5'
16218 5' -57 NC_004065.1 + 113407 0.76 0.489264
Target:  5'- cUCGCGACGucGUGGCCAGGGagcugcgcagaGCGGCggCCg -3'
miRNA:   3'- -GGUGCUGC--CACUGGUCCC-----------UGUCGa-GG- -5'
16218 5' -57 NC_004065.1 + 200786 0.75 0.54504
Target:  5'- gCGCGGCGGUGGCgGGcGACGGCgUCUc -3'
miRNA:   3'- gGUGCUGCCACUGgUCcCUGUCG-AGG- -5'
16218 5' -57 NC_004065.1 + 169854 0.74 0.563149
Target:  5'- aCCGCGACGGgu-UCGGGGACggugacgGGCUCg -3'
miRNA:   3'- -GGUGCUGCCacuGGUCCCUG-------UCGAGg -5'
16218 5' -57 NC_004065.1 + 134150 0.73 0.641628
Target:  5'- gCACGACuguguGGUGGuCCAcacgcaGGACGGCUCCg -3'
miRNA:   3'- gGUGCUG-----CCACU-GGUc-----CCUGUCGAGG- -5'
16218 5' -57 NC_004065.1 + 77415 0.73 0.651357
Target:  5'- aCAUGGCGGUGACCcGGGcGCuGCUg- -3'
miRNA:   3'- gGUGCUGCCACUGGuCCC-UGuCGAgg -5'
16218 5' -57 NC_004065.1 + 142763 0.72 0.687178
Target:  5'- cCCGCGACgacgacggccugcuGGUGguggcGCCGGGGGCGGCcaUCUu -3'
miRNA:   3'- -GGUGCUG--------------CCAC-----UGGUCCCUGUCG--AGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.