miRNA display CGI


Results 41 - 60 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16218 5' -57 NC_004065.1 + 169854 0.74 0.563149
Target:  5'- aCCGCGACGGgu-UCGGGGACggugacgGGCUCg -3'
miRNA:   3'- -GGUGCUGCCacuGGUCCCUG-------UCGAGg -5'
16218 5' -57 NC_004065.1 + 200786 0.75 0.54504
Target:  5'- gCGCGGCGGUGGCgGGcGACGGCgUCUc -3'
miRNA:   3'- gGUGCUGCCACUGgUCcCUGUCG-AGG- -5'
16218 5' -57 NC_004065.1 + 113407 0.76 0.489264
Target:  5'- cUCGCGACGucGUGGCCAGGGagcugcgcagaGCGGCggCCg -3'
miRNA:   3'- -GGUGCUGC--CACUGGUCCC-----------UGUCGa-GG- -5'
16218 5' -57 NC_004065.1 + 31461 0.77 0.436304
Target:  5'- -gACGGCGGUaGCCAGGGagaccGCGGCUCg -3'
miRNA:   3'- ggUGCUGCCAcUGGUCCC-----UGUCGAGg -5'
16218 5' -57 NC_004065.1 + 194854 0.78 0.374239
Target:  5'- aCCACGGCGGcggacacgaucuuccUGACCAGGGuCuugGGCUUCg -3'
miRNA:   3'- -GGUGCUGCC---------------ACUGGUCCCuG---UCGAGG- -5'
16218 5' -57 NC_004065.1 + 96275 0.71 0.728068
Target:  5'- -gACGGCGGggcGGCCAGGGGCGucacggacGCcgUCCa -3'
miRNA:   3'- ggUGCUGCCa--CUGGUCCCUGU--------CG--AGG- -5'
16218 5' -57 NC_004065.1 + 152308 0.71 0.746653
Target:  5'- gCgGCGGCGGUG-CCggcGGGGACgaugacGGCUUCg -3'
miRNA:   3'- -GgUGCUGCCACuGG---UCCCUG------UCGAGG- -5'
16218 5' -57 NC_004065.1 + 118168 0.69 0.855847
Target:  5'- aCCGCGGCGGcGGCC-GucACGGCUgCCg -3'
miRNA:   3'- -GGUGCUGCCaCUGGuCccUGUCGA-GG- -5'
16218 5' -57 NC_004065.1 + 119317 0.69 0.848367
Target:  5'- --uCGAgGGUGgcggcucucGCCcuGGGCAGCUCCa -3'
miRNA:   3'- gguGCUgCCAC---------UGGucCCUGUCGAGG- -5'
16218 5' -57 NC_004065.1 + 200272 0.69 0.840708
Target:  5'- cCCA-GACGGgauaGCCGGGGA-AGCUCUc -3'
miRNA:   3'- -GGUgCUGCCac--UGGUCCCUgUCGAGG- -5'
16218 5' -57 NC_004065.1 + 79982 0.69 0.832878
Target:  5'- aCACGGuCGccGACCGcGGGCAGUUCCu -3'
miRNA:   3'- gGUGCU-GCcaCUGGUcCCUGUCGAGG- -5'
16218 5' -57 NC_004065.1 + 30500 0.7 0.824075
Target:  5'- -gGCGACGGcguuggaUGAuuCCGGGGGC-GUUCCg -3'
miRNA:   3'- ggUGCUGCC-------ACU--GGUCCCUGuCGAGG- -5'
16218 5' -57 NC_004065.1 + 224347 0.7 0.822453
Target:  5'- aCCACGugaugacgaucagcACGGUGugCAGGauguccauguGGCGGCguUCCg -3'
miRNA:   3'- -GGUGC--------------UGCCACugGUCC----------CUGUCG--AGG- -5'
16218 5' -57 NC_004065.1 + 116798 0.7 0.81673
Target:  5'- gCCACGuACGuGuUGGCCGguaccgaccGGGGCAGCguggCCg -3'
miRNA:   3'- -GGUGC-UGC-C-ACUGGU---------CCCUGUCGa---GG- -5'
16218 5' -57 NC_004065.1 + 139004 0.7 0.808424
Target:  5'- cUCGgGACGGUGGCCAuGGACcGCgUCa -3'
miRNA:   3'- -GGUgCUGCCACUGGUcCCUGuCG-AGg -5'
16218 5' -57 NC_004065.1 + 131363 0.7 0.808424
Target:  5'- -gACGAC-GUGAUCAGGGuguuACAGCUUUa -3'
miRNA:   3'- ggUGCUGcCACUGGUCCC----UGUCGAGG- -5'
16218 5' -57 NC_004065.1 + 133259 0.7 0.791386
Target:  5'- cUCAUGGCGGUGAaucUCGGuGGugAGUUCa -3'
miRNA:   3'- -GGUGCUGCCACU---GGUC-CCugUCGAGg -5'
16218 5' -57 NC_004065.1 + 53855 0.7 0.782669
Target:  5'- uUCGCGGCGGUcgcGCC-GGGAUGGCcacUCCg -3'
miRNA:   3'- -GGUGCUGCCAc--UGGuCCCUGUCG---AGG- -5'
16218 5' -57 NC_004065.1 + 113771 0.71 0.773829
Target:  5'- gCGCGGCGGcagacGACCGacucGGGCGGCUUCu -3'
miRNA:   3'- gGUGCUGCCa----CUGGUc---CCUGUCGAGG- -5'
16218 5' -57 NC_004065.1 + 197152 0.71 0.773829
Target:  5'- cUCGcCGGCGcGccucucGACCAGGGACgccAGCUCCc -3'
miRNA:   3'- -GGU-GCUGC-Ca-----CUGGUCCCUG---UCGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.