miRNA display CGI


Results 61 - 80 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16218 5' -57 NC_004065.1 + 131363 0.7 0.808424
Target:  5'- -gACGAC-GUGAUCAGGGuguuACAGCUUUa -3'
miRNA:   3'- ggUGCUGcCACUGGUCCC----UGUCGAGG- -5'
16218 5' -57 NC_004065.1 + 88970 0.69 0.866012
Target:  5'- gCGUGAUGGUGGCCAccuGGGGCgccuugacgccguccAGCUUCa -3'
miRNA:   3'- gGUGCUGCCACUGGU---CCCUG---------------UCGAGG- -5'
16218 5' -57 NC_004065.1 + 195656 0.68 0.870254
Target:  5'- uCUugGGggguaaacUGGUGACCugaucgGGGGAaGGCUCCu -3'
miRNA:   3'- -GGugCU--------GCCACUGG------UCCCUgUCGAGG- -5'
16218 5' -57 NC_004065.1 + 18427 0.68 0.870254
Target:  5'- -aGCGAUGGUagacgagcgaGACCucGGACAGCcgCCg -3'
miRNA:   3'- ggUGCUGCCA----------CUGGucCCUGUCGa-GG- -5'
16218 5' -57 NC_004065.1 + 75784 0.68 0.87717
Target:  5'- -gGCGGCGGUcGGCgAGGGGgAGCg-- -3'
miRNA:   3'- ggUGCUGCCA-CUGgUCCCUgUCGagg -5'
16218 5' -57 NC_004065.1 + 33729 0.68 0.87717
Target:  5'- -gGCGACGGUGGCUcGGccCAGCgCCu -3'
miRNA:   3'- ggUGCUGCCACUGGuCCcuGUCGaGG- -5'
16218 5' -57 NC_004065.1 + 67654 0.68 0.87717
Target:  5'- aCGCGuCGGUGAugUCGGGGAgCGGCg-- -3'
miRNA:   3'- gGUGCuGCCACU--GGUCCCU-GUCGagg -5'
16218 5' -57 NC_004065.1 + 61419 0.68 0.881893
Target:  5'- -gACGACGGUcGAguagaggccccuacCCAGGGcCGGC-CCg -3'
miRNA:   3'- ggUGCUGCCA-CU--------------GGUCCCuGUCGaGG- -5'
16218 5' -57 NC_004065.1 + 195089 0.68 0.883887
Target:  5'- gCGCGGCGcaGACCcccAGGGGCgucAGCUCg -3'
miRNA:   3'- gGUGCUGCcaCUGG---UCCCUG---UCGAGg -5'
16218 5' -57 NC_004065.1 + 63400 0.69 0.863145
Target:  5'- uCCGCGcaucgaGCaGGUGAUCAGGcACGucGCUCCg -3'
miRNA:   3'- -GGUGC------UG-CCACUGGUCCcUGU--CGAGG- -5'
16218 5' -57 NC_004065.1 + 60398 0.69 0.863145
Target:  5'- aCCGCGuCGcG-GACCAGGGACuccAGggCCu -3'
miRNA:   3'- -GGUGCuGC-CaCUGGUCCCUG---UCgaGG- -5'
16218 5' -57 NC_004065.1 + 139004 0.7 0.808424
Target:  5'- cUCGgGACGGUGGCCAuGGACcGCgUCa -3'
miRNA:   3'- -GGUgCUGCCACUGGUcCCUGuCG-AGg -5'
16218 5' -57 NC_004065.1 + 116798 0.7 0.81673
Target:  5'- gCCACGuACGuGuUGGCCGguaccgaccGGGGCAGCguggCCg -3'
miRNA:   3'- -GGUGC-UGC-C-ACUGGU---------CCCUGUCGa---GG- -5'
16218 5' -57 NC_004065.1 + 224347 0.7 0.822453
Target:  5'- aCCACGugaugacgaucagcACGGUGugCAGGauguccauguGGCGGCguUCCg -3'
miRNA:   3'- -GGUGC--------------UGCCACugGUCC----------CUGUCG--AGG- -5'
16218 5' -57 NC_004065.1 + 30500 0.7 0.824075
Target:  5'- -gGCGACGGcguuggaUGAuuCCGGGGGC-GUUCCg -3'
miRNA:   3'- ggUGCUGCC-------ACU--GGUCCCUGuCGAGG- -5'
16218 5' -57 NC_004065.1 + 79982 0.69 0.832878
Target:  5'- aCACGGuCGccGACCGcGGGCAGUUCCu -3'
miRNA:   3'- gGUGCU-GCcaCUGGUcCCUGUCGAGG- -5'
16218 5' -57 NC_004065.1 + 200272 0.69 0.840708
Target:  5'- cCCA-GACGGgauaGCCGGGGA-AGCUCUc -3'
miRNA:   3'- -GGUgCUGCCac--UGGUCCCUgUCGAGG- -5'
16218 5' -57 NC_004065.1 + 119317 0.69 0.848367
Target:  5'- --uCGAgGGUGgcggcucucGCCcuGGGCAGCUCCa -3'
miRNA:   3'- gguGCUgCCAC---------UGGucCCUGUCGAGG- -5'
16218 5' -57 NC_004065.1 + 118168 0.69 0.855847
Target:  5'- aCCGCGGCGGcGGCC-GucACGGCUgCCg -3'
miRNA:   3'- -GGUGCUGCCaCUGGuCccUGUCGA-GG- -5'
16218 5' -57 NC_004065.1 + 195351 0.66 0.955798
Target:  5'- cCCGCGucuugaaGGUGGCCAacacgauagcGGGAUucCUCCg -3'
miRNA:   3'- -GGUGCug-----CCACUGGU----------CCCUGucGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.