miRNA display CGI


Results 81 - 100 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16218 5' -57 NC_004065.1 + 102547 0.7 0.808424
Target:  5'- uCCuCGuCGGUGgcGCCGGGGuCGGgUCCc -3'
miRNA:   3'- -GGuGCuGCCAC--UGGUCCCuGUCgAGG- -5'
16218 5' -57 NC_004065.1 + 28391 0.7 0.81673
Target:  5'- aCCGgGACaccggGGUGuuccaCGGGGcGCAGCUCCu -3'
miRNA:   3'- -GGUgCUG-----CCACug---GUCCC-UGUCGAGG- -5'
16218 5' -57 NC_004065.1 + 182890 0.69 0.832878
Target:  5'- cCCACGAgcuCGGaGACCGacGGCAGCUCg -3'
miRNA:   3'- -GGUGCU---GCCaCUGGUccCUGUCGAGg -5'
16218 5' -57 NC_004065.1 + 129894 0.69 0.840708
Target:  5'- gCUGCGGCGGacccUGAUCGGGGccugGCGGCaCCu -3'
miRNA:   3'- -GGUGCUGCC----ACUGGUCCC----UGUCGaGG- -5'
16218 5' -57 NC_004065.1 + 81680 0.69 0.848367
Target:  5'- -gACGGaccgGGUGACCAaGGACGGCgacaCCg -3'
miRNA:   3'- ggUGCUg---CCACUGGUcCCUGUCGa---GG- -5'
16218 5' -57 NC_004065.1 + 210146 0.69 0.848367
Target:  5'- gCgGCGACGGggugGAUCAGGGucucUAGCacgCCa -3'
miRNA:   3'- -GgUGCUGCCa---CUGGUCCCu---GUCGa--GG- -5'
16218 5' -57 NC_004065.1 + 148926 0.69 0.855847
Target:  5'- cUCGCgGACGGUGggguACCAGGGAgCuacgguGCUCg -3'
miRNA:   3'- -GGUG-CUGCCAC----UGGUCCCU-Gu-----CGAGg -5'
16218 5' -57 NC_004065.1 + 120488 0.69 0.862424
Target:  5'- -gACGACGGUGucgugcCCGGGGuagACGgugaccuGCUCCa -3'
miRNA:   3'- ggUGCUGCCACu-----GGUCCC---UGU-------CGAGG- -5'
16218 5' -57 NC_004065.1 + 38200 0.68 0.876487
Target:  5'- aCCACGACGGcacUGAuagccCCGGGGGggugggaucccucCGGCUUg -3'
miRNA:   3'- -GGUGCUGCC---ACU-----GGUCCCU-------------GUCGAGg -5'
16218 5' -57 NC_004065.1 + 172076 0.7 0.799121
Target:  5'- uCCAagggggcUGugGGUGgagggGCCGGGGgagGCGGCUCUg -3'
miRNA:   3'- -GGU-------GCugCCAC-----UGGUCCC---UGUCGAGG- -5'
16218 5' -57 NC_004065.1 + 194625 0.7 0.797412
Target:  5'- aCGCGAgGGgggagcuguugcgcUGcGCCAGGGcgugcaaugGCAGCUCCu -3'
miRNA:   3'- gGUGCUgCC--------------AC-UGGUCCC---------UGUCGAGG- -5'
16218 5' -57 NC_004065.1 + 31076 0.74 0.583346
Target:  5'- cUCGCGGCuGGUGGCCAcGGGCGGCg-- -3'
miRNA:   3'- -GGUGCUG-CCACUGGUcCCUGUCGagg -5'
16218 5' -57 NC_004065.1 + 114868 0.74 0.593016
Target:  5'- gCgACGACGGUGccGCCGGccGGCGGUUCCg -3'
miRNA:   3'- -GgUGCUGCCAC--UGGUCc-CUGUCGAGG- -5'
16218 5' -57 NC_004065.1 + 199222 0.74 0.593016
Target:  5'- aCCGCGACGGUGACgaCAGGuGCAuuGUUCUc -3'
miRNA:   3'- -GGUGCUGCCACUG--GUCCcUGU--CGAGG- -5'
16218 5' -57 NC_004065.1 + 177492 0.73 0.651357
Target:  5'- gCACGGCGGggccGCCGGGGGuCAGUaUCCc -3'
miRNA:   3'- gGUGCUGCCac--UGGUCCCU-GUCG-AGG- -5'
16218 5' -57 NC_004065.1 + 43779 0.72 0.680433
Target:  5'- aCCuguuCGGgGGccaGGCCAGGGGCAgcaucGCUCCa -3'
miRNA:   3'- -GGu---GCUgCCa--CUGGUCCCUGU-----CGAGG- -5'
16218 5' -57 NC_004065.1 + 34513 0.72 0.680433
Target:  5'- gCugGACGG-GACCGGGcgcucuGACgcgGGCUCCc -3'
miRNA:   3'- gGugCUGCCaCUGGUCC------CUG---UCGAGG- -5'
16218 5' -57 NC_004065.1 + 5026 0.72 0.699649
Target:  5'- aCCA-GACGGUGuACUuGGGuCAGCUCg -3'
miRNA:   3'- -GGUgCUGCCAC-UGGuCCCuGUCGAGg -5'
16218 5' -57 NC_004065.1 + 161844 0.71 0.737402
Target:  5'- -aGCGGCGG-GGCC---GACAGCUCCg -3'
miRNA:   3'- ggUGCUGCCaCUGGuccCUGUCGAGG- -5'
16218 5' -57 NC_004065.1 + 155833 0.71 0.746653
Target:  5'- uUCGCGACGGUGcGCUGGaGGGCGGUcaUCg -3'
miRNA:   3'- -GGUGCUGCCAC-UGGUC-CCUGUCG--AGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.