miRNA display CGI


Results 21 - 40 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16218 5' -57 NC_004065.1 + 98687 0.68 0.87717
Target:  5'- cCCGauCGACGG-GACCcgucauGGGGACgcccAGCUUCu -3'
miRNA:   3'- -GGU--GCUGCCaCUGG------UCCCUG----UCGAGG- -5'
16218 5' -57 NC_004065.1 + 148926 0.69 0.855847
Target:  5'- cUCGCgGACGGUGggguACCAGGGAgCuacgguGCUCg -3'
miRNA:   3'- -GGUG-CUGCCAC----UGGUCCCU-Gu-----CGAGg -5'
16218 5' -57 NC_004065.1 + 194625 0.7 0.797412
Target:  5'- aCGCGAgGGgggagcuguugcgcUGcGCCAGGGcgugcaaugGCAGCUCCu -3'
miRNA:   3'- gGUGCUgCC--------------AC-UGGUCCC---------UGUCGAGG- -5'
16218 5' -57 NC_004065.1 + 199222 0.74 0.593016
Target:  5'- aCCGCGACGGUGACgaCAGGuGCAuuGUUCUc -3'
miRNA:   3'- -GGUGCUGCCACUG--GUCCcUGU--CGAGG- -5'
16218 5' -57 NC_004065.1 + 93611 0.67 0.928634
Target:  5'- -gAUGAgGGgGGCCAGGaGACgcaucacguagacgGGCUCCu -3'
miRNA:   3'- ggUGCUgCCaCUGGUCC-CUG--------------UCGAGG- -5'
16218 5' -57 NC_004065.1 + 170358 0.68 0.902815
Target:  5'- -gACGACGaG-GACgAGGuGGCGuGCUCCg -3'
miRNA:   3'- ggUGCUGC-CaCUGgUCC-CUGU-CGAGG- -5'
16218 5' -57 NC_004065.1 + 81680 0.69 0.848367
Target:  5'- -gACGGaccgGGUGACCAaGGACGGCgacaCCg -3'
miRNA:   3'- ggUGCUg---CCACUGGUcCCUGUCGa---GG- -5'
16218 5' -57 NC_004065.1 + 114868 0.74 0.593016
Target:  5'- gCgACGACGGUGccGCCGGccGGCGGUUCCg -3'
miRNA:   3'- -GgUGCUGCCAC--UGGUCc-CUGUCGAGG- -5'
16218 5' -57 NC_004065.1 + 16896 0.68 0.902815
Target:  5'- gCCACuACGGUGACCacgcAGGGAUacacgacuAGCaugaaguuggcgUCCa -3'
miRNA:   3'- -GGUGcUGCCACUGG----UCCCUG--------UCG------------AGG- -5'
16218 5' -57 NC_004065.1 + 31076 0.74 0.583346
Target:  5'- cUCGCGGCuGGUGGCCAcGGGCGGCg-- -3'
miRNA:   3'- -GGUGCUG-CCACUGGUcCCUGUCGagg -5'
16218 5' -57 NC_004065.1 + 210146 0.69 0.848367
Target:  5'- gCgGCGACGGggugGAUCAGGGucucUAGCacgCCa -3'
miRNA:   3'- -GgUGCUGCCa---CUGGUCCCu---GUCGa--GG- -5'
16218 5' -57 NC_004065.1 + 149308 0.68 0.883887
Target:  5'- uUCACGGgGGUagcGGCC-GGGAU-GCUCCc -3'
miRNA:   3'- -GGUGCUgCCA---CUGGuCCCUGuCGAGG- -5'
16218 5' -57 NC_004065.1 + 28391 0.7 0.81673
Target:  5'- aCCGgGACaccggGGUGuuccaCGGGGcGCAGCUCCu -3'
miRNA:   3'- -GGUgCUG-----CCACug---GUCCC-UGUCGAGG- -5'
16218 5' -57 NC_004065.1 + 172076 0.7 0.799121
Target:  5'- uCCAagggggcUGugGGUGgagggGCCGGGGgagGCGGCUCUg -3'
miRNA:   3'- -GGU-------GCugCCAC-----UGGUCCC---UGUCGAGG- -5'
16218 5' -57 NC_004065.1 + 5026 0.72 0.699649
Target:  5'- aCCA-GACGGUGuACUuGGGuCAGCUCg -3'
miRNA:   3'- -GGUgCUGCCAC-UGGuCCCuGUCGAGg -5'
16218 5' -57 NC_004065.1 + 177492 0.73 0.651357
Target:  5'- gCACGGCGGggccGCCGGGGGuCAGUaUCCc -3'
miRNA:   3'- gGUGCUGCCac--UGGUCCCU-GUCG-AGG- -5'
16218 5' -57 NC_004065.1 + 4041 0.67 0.930121
Target:  5'- aCgGCGAUGGaGACCucGGGACcugguucaagcAGCUUCu -3'
miRNA:   3'- -GgUGCUGCCaCUGGu-CCCUG-----------UCGAGG- -5'
16218 5' -57 NC_004065.1 + 64784 0.67 0.930121
Target:  5'- gCACaGACagaGGggGACCAGGGAUAauauCUCCa -3'
miRNA:   3'- gGUG-CUG---CCa-CUGGUCCCUGUc---GAGG- -5'
16218 5' -57 NC_004065.1 + 122819 0.67 0.925091
Target:  5'- -gGCGaACGG-GACgAGGuaucagucGACGGCUCCc -3'
miRNA:   3'- ggUGC-UGCCaCUGgUCC--------CUGUCGAGG- -5'
16218 5' -57 NC_004065.1 + 143266 0.67 0.908705
Target:  5'- cCCGCGGCGG-----GGGcGGCAGCUUCa -3'
miRNA:   3'- -GGUGCUGCCacuggUCC-CUGUCGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.