miRNA display CGI


Results 41 - 60 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16218 5' -57 NC_004065.1 + 31076 0.74 0.583346
Target:  5'- cUCGCGGCuGGUGGCCAcGGGCGGCg-- -3'
miRNA:   3'- -GGUGCUG-CCACUGGUcCCUGUCGagg -5'
16218 5' -57 NC_004065.1 + 204759 0.77 0.444905
Target:  5'- gCC-CGACa--GGCCGGGGACAGCUCUu -3'
miRNA:   3'- -GGuGCUGccaCUGGUCCCUGUCGAGG- -5'
16218 5' -57 NC_004065.1 + 65314 0.66 0.943915
Target:  5'- cCCGCGugGuGgGACCGGcGGcggcggcggcaGCAGCUgCg -3'
miRNA:   3'- -GGUGCugC-CaCUGGUC-CC-----------UGUCGAgG- -5'
16218 5' -57 NC_004065.1 + 76063 0.67 0.919845
Target:  5'- aCCGCGACGGcgcaGACaAGucGCAGgCUCCg -3'
miRNA:   3'- -GGUGCUGCCa---CUGgUCccUGUC-GAGG- -5'
16218 5' -57 NC_004065.1 + 32227 0.67 0.934934
Target:  5'- gCCGCGGgcgcUGGUGACCAacGcGGACAccgGCgaUCCg -3'
miRNA:   3'- -GGUGCU----GCCACUGGU--C-CCUGU---CG--AGG- -5'
16218 5' -57 NC_004065.1 + 4041 0.67 0.930121
Target:  5'- aCgGCGAUGGaGACCucGGGACcugguucaagcAGCUUCu -3'
miRNA:   3'- -GgUGCUGCCaCUGGu-CCCUG-----------UCGAGG- -5'
16218 5' -57 NC_004065.1 + 64784 0.67 0.930121
Target:  5'- gCACaGACagaGGggGACCAGGGAUAauauCUCCa -3'
miRNA:   3'- gGUG-CUG---CCa-CUGGUCCCUGUc---GAGG- -5'
16218 5' -57 NC_004065.1 + 16896 0.68 0.902815
Target:  5'- gCCACuACGGUGACCacgcAGGGAUacacgacuAGCaugaaguuggcgUCCa -3'
miRNA:   3'- -GGUGcUGCCACUGG----UCCCUG--------UCG------------AGG- -5'
16218 5' -57 NC_004065.1 + 98687 0.68 0.87717
Target:  5'- cCCGauCGACGG-GACCcgucauGGGGACgcccAGCUUCu -3'
miRNA:   3'- -GGU--GCUGCCaCUGG------UCCCUG----UCGAGG- -5'
16218 5' -57 NC_004065.1 + 148926 0.69 0.855847
Target:  5'- cUCGCgGACGGUGggguACCAGGGAgCuacgguGCUCg -3'
miRNA:   3'- -GGUG-CUGCCAC----UGGUCCCU-Gu-----CGAGg -5'
16218 5' -57 NC_004065.1 + 28391 0.7 0.81673
Target:  5'- aCCGgGACaccggGGUGuuccaCGGGGcGCAGCUCCu -3'
miRNA:   3'- -GGUgCUG-----CCACug---GUCCC-UGUCGAGG- -5'
16218 5' -57 NC_004065.1 + 172076 0.7 0.799121
Target:  5'- uCCAagggggcUGugGGUGgagggGCCGGGGgagGCGGCUCUg -3'
miRNA:   3'- -GGU-------GCugCCAC-----UGGUCCC---UGUCGAGG- -5'
16218 5' -57 NC_004065.1 + 5026 0.72 0.699649
Target:  5'- aCCA-GACGGUGuACUuGGGuCAGCUCg -3'
miRNA:   3'- -GGUgCUGCCAC-UGGuCCCuGUCGAGg -5'
16218 5' -57 NC_004065.1 + 177492 0.73 0.651357
Target:  5'- gCACGGCGGggccGCCGGGGGuCAGUaUCCc -3'
miRNA:   3'- gGUGCUGCCac--UGGUCCCU-GUCG-AGG- -5'
16218 5' -57 NC_004065.1 + 207233 0.66 0.938175
Target:  5'- -aGCGACGGUGGCCGGucgugaggacGACgaugguauauuuuuGGCUCUg -3'
miRNA:   3'- ggUGCUGCCACUGGUCc---------CUG--------------UCGAGG- -5'
16218 5' -57 NC_004065.1 + 75354 0.66 0.939532
Target:  5'- uCCuCGACGGUGcCCgAGaGGAgCAGCUg- -3'
miRNA:   3'- -GGuGCUGCCACuGG-UC-CCU-GUCGAgg -5'
16218 5' -57 NC_004065.1 + 69104 0.66 0.939532
Target:  5'- gCAUGACGGUGGacgagCAGGacgcGCGGCgcgCCg -3'
miRNA:   3'- gGUGCUGCCACUg----GUCCc---UGUCGa--GG- -5'
16218 5' -57 NC_004065.1 + 60398 0.69 0.863145
Target:  5'- aCCGCGuCGcG-GACCAGGGACuccAGggCCu -3'
miRNA:   3'- -GGUGCuGC-CaCUGGUCCCUG---UCgaGG- -5'
16218 5' -57 NC_004065.1 + 96275 0.71 0.728068
Target:  5'- -gACGGCGGggcGGCCAGGGGCGucacggacGCcgUCCa -3'
miRNA:   3'- ggUGCUGCCa--CUGGUCCCUGU--------CG--AGG- -5'
16218 5' -57 NC_004065.1 + 63400 0.69 0.863145
Target:  5'- uCCGCGcaucgaGCaGGUGAUCAGGcACGucGCUCCg -3'
miRNA:   3'- -GGUGC------UG-CCACUGGUCCcUGU--CGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.