miRNA display CGI


Results 61 - 80 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16218 5' -57 NC_004065.1 + 118168 0.69 0.855847
Target:  5'- aCCGCGGCGGcGGCC-GucACGGCUgCCg -3'
miRNA:   3'- -GGUGCUGCCaCUGGuCccUGUCGA-GG- -5'
16218 5' -57 NC_004065.1 + 119317 0.69 0.848367
Target:  5'- --uCGAgGGUGgcggcucucGCCcuGGGCAGCUCCa -3'
miRNA:   3'- gguGCUgCCAC---------UGGucCCUGUCGAGG- -5'
16218 5' -57 NC_004065.1 + 200272 0.69 0.840708
Target:  5'- cCCA-GACGGgauaGCCGGGGA-AGCUCUc -3'
miRNA:   3'- -GGUgCUGCCac--UGGUCCCUgUCGAGG- -5'
16218 5' -57 NC_004065.1 + 134150 0.73 0.641628
Target:  5'- gCACGACuguguGGUGGuCCAcacgcaGGACGGCUCCg -3'
miRNA:   3'- gGUGCUG-----CCACU-GGUc-----CCUGUCGAGG- -5'
16218 5' -57 NC_004065.1 + 172080 0.72 0.71866
Target:  5'- gCCGCcGCGGUucGAgCGGGGgacguagcGCGGCUCCu -3'
miRNA:   3'- -GGUGcUGCCA--CUgGUCCC--------UGUCGAGG- -5'
16218 5' -57 NC_004065.1 + 96275 0.71 0.728068
Target:  5'- -gACGGCGGggcGGCCAGGGGCGucacggacGCcgUCCa -3'
miRNA:   3'- ggUGCUGCCa--CUGGUCCCUGU--------CG--AGG- -5'
16218 5' -57 NC_004065.1 + 169776 0.67 0.919845
Target:  5'- uCCGCGACGGguuuggGAgCGggaacGGGAacgGGCUCUg -3'
miRNA:   3'- -GGUGCUGCCa-----CUgGU-----CCCUg--UCGAGG- -5'
16218 5' -57 NC_004065.1 + 212835 0.67 0.925091
Target:  5'- aUCACaACGGUGAUCAGG-AUAGCg-- -3'
miRNA:   3'- -GGUGcUGCCACUGGUCCcUGUCGagg -5'
16218 5' -57 NC_004065.1 + 135153 0.67 0.928135
Target:  5'- -gACGACGGggacgucgaugacGACgAGGGACuGC-CCg -3'
miRNA:   3'- ggUGCUGCCa------------CUGgUCCCUGuCGaGG- -5'
16218 5' -57 NC_004065.1 + 79982 0.69 0.832878
Target:  5'- aCACGGuCGccGACCGcGGGCAGUUCCu -3'
miRNA:   3'- gGUGCU-GCcaCUGGUcCCUGUCGAGG- -5'
16218 5' -57 NC_004065.1 + 19840 0.67 0.930121
Target:  5'- -aGCGGCGGUG-UC-GGGACgaAGCUgCCg -3'
miRNA:   3'- ggUGCUGCCACuGGuCCCUG--UCGA-GG- -5'
16218 5' -57 NC_004065.1 + 42132 0.67 0.930121
Target:  5'- gCACGACGGgGACacgccGGACAGCg-- -3'
miRNA:   3'- gGUGCUGCCaCUGguc--CCUGUCGagg -5'
16218 5' -57 NC_004065.1 + 148823 0.67 0.934463
Target:  5'- uCCGCG-CGGU-ACUgcgcguuGGGGAuCAGCUCUc -3'
miRNA:   3'- -GGUGCuGCCAcUGG-------UCCCU-GUCGAGG- -5'
16218 5' -57 NC_004065.1 + 37869 0.67 0.934934
Target:  5'- gCgACGGCGGUGAUCGGcacGAU-GUUCCg -3'
miRNA:   3'- -GgUGCUGCCACUGGUCc--CUGuCGAGG- -5'
16218 5' -57 NC_004065.1 + 200017 0.67 0.934934
Target:  5'- gCACcGCGGUcgUCAGGGGCAGgUgCCg -3'
miRNA:   3'- gGUGcUGCCAcuGGUCCCUGUCgA-GG- -5'
16218 5' -57 NC_004065.1 + 69104 0.66 0.939532
Target:  5'- gCAUGACGGUGGacgagCAGGacgcGCGGCgcgCCg -3'
miRNA:   3'- gGUGCUGCCACUg----GUCCc---UGUCGa--GG- -5'
16218 5' -57 NC_004065.1 + 75354 0.66 0.939532
Target:  5'- uCCuCGACGGUGcCCgAGaGGAgCAGCUg- -3'
miRNA:   3'- -GGuGCUGCCACuGG-UC-CCU-GUCGAgg -5'
16218 5' -57 NC_004065.1 + 75489 0.66 0.939532
Target:  5'- -gGCGGCGGcgagGAUCAGGGcGCAGUg-- -3'
miRNA:   3'- ggUGCUGCCa---CUGGUCCC-UGUCGagg -5'
16218 5' -57 NC_004065.1 + 70476 0.66 0.943915
Target:  5'- uUCACGGCGGcGuuCAGGGACA---CCg -3'
miRNA:   3'- -GGUGCUGCCaCugGUCCCUGUcgaGG- -5'
16218 5' -57 NC_004065.1 + 55735 0.67 0.930121
Target:  5'- --cUGACGGUGAgCAGGGuccACAuGCuaUCCg -3'
miRNA:   3'- gguGCUGCCACUgGUCCC---UGU-CG--AGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.