Results 81 - 100 of 134 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16218 | 5' | -57 | NC_004065.1 | + | 63400 | 0.69 | 0.863145 |
Target: 5'- uCCGCGcaucgaGCaGGUGAUCAGGcACGucGCUCCg -3' miRNA: 3'- -GGUGC------UG-CCACUGGUCCcUGU--CGAGG- -5' |
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16218 | 5' | -57 | NC_004065.1 | + | 135368 | 0.68 | 0.883887 |
Target: 5'- aCGCGGCGaGUucuUCAGGGACGGUgacgcgCCg -3' miRNA: 3'- gGUGCUGC-CAcu-GGUCCCUGUCGa-----GG- -5' |
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16218 | 5' | -57 | NC_004065.1 | + | 135153 | 0.67 | 0.928135 |
Target: 5'- -gACGACGGggacgucgaugacGACgAGGGACuGC-CCg -3' miRNA: 3'- ggUGCUGCCa------------CUGgUCCCUGuCGaGG- -5' |
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16218 | 5' | -57 | NC_004065.1 | + | 55735 | 0.67 | 0.930121 |
Target: 5'- --cUGACGGUGAgCAGGGuccACAuGCuaUCCg -3' miRNA: 3'- gguGCUGCCACUgGUCCC---UGU-CG--AGG- -5' |
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16218 | 5' | -57 | NC_004065.1 | + | 19840 | 0.67 | 0.930121 |
Target: 5'- -aGCGGCGGUG-UC-GGGACgaAGCUgCCg -3' miRNA: 3'- ggUGCUGCCACuGGuCCCUG--UCGA-GG- -5' |
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16218 | 5' | -57 | NC_004065.1 | + | 42132 | 0.67 | 0.930121 |
Target: 5'- gCACGACGGgGACacgccGGACAGCg-- -3' miRNA: 3'- gGUGCUGCCaCUGguc--CCUGUCGagg -5' |
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16218 | 5' | -57 | NC_004065.1 | + | 148823 | 0.67 | 0.934463 |
Target: 5'- uCCGCG-CGGU-ACUgcgcguuGGGGAuCAGCUCUc -3' miRNA: 3'- -GGUGCuGCCAcUGG-------UCCCU-GUCGAGG- -5' |
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16218 | 5' | -57 | NC_004065.1 | + | 37869 | 0.67 | 0.934934 |
Target: 5'- gCgACGGCGGUGAUCGGcacGAU-GUUCCg -3' miRNA: 3'- -GgUGCUGCCACUGGUCc--CUGuCGAGG- -5' |
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16218 | 5' | -57 | NC_004065.1 | + | 200017 | 0.67 | 0.934934 |
Target: 5'- gCACcGCGGUcgUCAGGGGCAGgUgCCg -3' miRNA: 3'- gGUGcUGCCAcuGGUCCCUGUCgA-GG- -5' |
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16218 | 5' | -57 | NC_004065.1 | + | 117146 | 0.67 | 0.934934 |
Target: 5'- cUCAgGACGGUGAaCGGcaccGACAGCgCCg -3' miRNA: 3'- -GGUgCUGCCACUgGUCc---CUGUCGaGG- -5' |
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16218 | 5' | -57 | NC_004065.1 | + | 212835 | 0.67 | 0.925091 |
Target: 5'- aUCACaACGGUGAUCAGG-AUAGCg-- -3' miRNA: 3'- -GGUGcUGCCACUGGUCCcUGUCGagg -5' |
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16218 | 5' | -57 | NC_004065.1 | + | 169776 | 0.67 | 0.919845 |
Target: 5'- uCCGCGACGGguuuggGAgCGggaacGGGAacgGGCUCUg -3' miRNA: 3'- -GGUGCUGCCa-----CUgGU-----CCCUg--UCGAGG- -5' |
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16218 | 5' | -57 | NC_004065.1 | + | 150713 | 0.68 | 0.890403 |
Target: 5'- aCCGcCGcCGGUGGgaggcCCAGGccgucGACAGCUCg -3' miRNA: 3'- -GGU-GCuGCCACU-----GGUCC-----CUGUCGAGg -5' |
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16218 | 5' | -57 | NC_004065.1 | + | 59938 | 0.68 | 0.894842 |
Target: 5'- gCGCGGCcagaagcccggaguGGUGcccGCCAGGuuGGCGGCUUCg -3' miRNA: 3'- gGUGCUG--------------CCAC---UGGUCC--CUGUCGAGG- -5' |
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16218 | 5' | -57 | NC_004065.1 | + | 118028 | 0.68 | 0.896713 |
Target: 5'- uCC-CGACGGagGAUCAGGcGGCccuGCUCg -3' miRNA: 3'- -GGuGCUGCCa-CUGGUCC-CUGu--CGAGg -5' |
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16218 | 5' | -57 | NC_004065.1 | + | 104158 | 0.68 | 0.902815 |
Target: 5'- uCCGCGGCGGUG-UCGGucGCcGCUUCg -3' miRNA: 3'- -GGUGCUGCCACuGGUCccUGuCGAGG- -5' |
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16218 | 5' | -57 | NC_004065.1 | + | 174324 | 0.68 | 0.902815 |
Target: 5'- cCCGCGAauGcGAUCAGGGAgauaacguaguCAGgUCCg -3' miRNA: 3'- -GGUGCUgcCaCUGGUCCCU-----------GUCgAGG- -5' |
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16218 | 5' | -57 | NC_004065.1 | + | 195273 | 0.67 | 0.908705 |
Target: 5'- gCC-CGGCGGgaaacugagGGCCAGGuGGaAGCUCUu -3' miRNA: 3'- -GGuGCUGCCa--------CUGGUCC-CUgUCGAGG- -5' |
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16218 | 5' | -57 | NC_004065.1 | + | 139881 | 0.67 | 0.913824 |
Target: 5'- uCCGUGACGGUGGuCCGGGuGAgGGUgaucgcaUCCc -3' miRNA: 3'- -GGUGCUGCCACU-GGUCC-CUgUCG-------AGG- -5' |
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16218 | 5' | -57 | NC_004065.1 | + | 127703 | 0.67 | 0.914382 |
Target: 5'- aCCACGcACGuGUu-UCGGGGGCuGCUCUc -3' miRNA: 3'- -GGUGC-UGC-CAcuGGUCCCUGuCGAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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