miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16219 3' -56 NC_004065.1 + 225936 0.67 0.957055
Target:  5'- -cCGUCGUcucccGCGGCGGGuGUUGcUCGuACGa -3'
miRNA:   3'- gaGCAGCA-----CGCUGCCC-CAGC-AGU-UGC- -5'
16219 3' -56 NC_004065.1 + 41947 0.67 0.957055
Target:  5'- -gCGUCGUGCacGGCcGGGUUcUCGACGc -3'
miRNA:   3'- gaGCAGCACG--CUGcCCCAGcAGUUGC- -5'
16219 3' -56 NC_004065.1 + 19568 0.67 0.957055
Target:  5'- -gUGUCG-GUGGCGGcGGUagCGUCGGCu -3'
miRNA:   3'- gaGCAGCaCGCUGCC-CCA--GCAGUUGc -5'
16219 3' -56 NC_004065.1 + 99848 0.67 0.953364
Target:  5'- -cCGUCGcaccagaugGCGcCGGGGUCGcggauagCGACGg -3'
miRNA:   3'- gaGCAGCa--------CGCuGCCCCAGCa------GUUGC- -5'
16219 3' -56 NC_004065.1 + 210553 0.67 0.953364
Target:  5'- uUCGUUGUGUc-UGGGGUUGUcCAugGg -3'
miRNA:   3'- gAGCAGCACGcuGCCCCAGCA-GUugC- -5'
16219 3' -56 NC_004065.1 + 35622 0.67 0.953364
Target:  5'- -aCGgcggCGgcgGCGGCGGGGaUGUCAucgGCGa -3'
miRNA:   3'- gaGCa---GCa--CGCUGCCCCaGCAGU---UGC- -5'
16219 3' -56 NC_004065.1 + 104144 0.67 0.953364
Target:  5'- cCUCGUCGUcgccuuccGCGGCGGuGUCGgUCGcCGc -3'
miRNA:   3'- -GAGCAGCA--------CGCUGCCcCAGC-AGUuGC- -5'
16219 3' -56 NC_004065.1 + 109825 0.67 0.949466
Target:  5'- cCUCGUCGccguccugcUGCGGCGGGGg-GcCAucGCGc -3'
miRNA:   3'- -GAGCAGC---------ACGCUGCCCCagCaGU--UGC- -5'
16219 3' -56 NC_004065.1 + 21509 0.67 0.949466
Target:  5'- -cUGUCGUGaUGGCGGuGGUcCGUguGCGa -3'
miRNA:   3'- gaGCAGCAC-GCUGCC-CCA-GCAguUGC- -5'
16219 3' -56 NC_004065.1 + 109515 0.67 0.949064
Target:  5'- aUCGUCGaGCGGCgccaagagGGGGUCGaugaaccccggauUUAGCGa -3'
miRNA:   3'- gAGCAGCaCGCUG--------CCCCAGC-------------AGUUGC- -5'
16219 3' -56 NC_004065.1 + 121070 0.67 0.941033
Target:  5'- -gCGUCGUGCccca-GGUCGUCGGCGu -3'
miRNA:   3'- gaGCAGCACGcugccCCAGCAGUUGC- -5'
16219 3' -56 NC_004065.1 + 169726 0.68 0.936494
Target:  5'- aUCG-CGaccUGCacauCGGGGUCGUCGGCu -3'
miRNA:   3'- gAGCaGC---ACGcu--GCCCCAGCAGUUGc -5'
16219 3' -56 NC_004065.1 + 14249 0.68 0.93174
Target:  5'- gCUCuUCGaaaUG-GACGGGGaUCGUCAACu -3'
miRNA:   3'- -GAGcAGC---ACgCUGCCCC-AGCAGUUGc -5'
16219 3' -56 NC_004065.1 + 91171 0.68 0.93174
Target:  5'- aUCGUCGcagGCGACGGccgcGGaagcgcCGUCGGCGu -3'
miRNA:   3'- gAGCAGCa--CGCUGCC----CCa-----GCAGUUGC- -5'
16219 3' -56 NC_004065.1 + 96143 0.68 0.926767
Target:  5'- -aCGUCGUcCGugGGGGUCGcgcuccUCAAg- -3'
miRNA:   3'- gaGCAGCAcGCugCCCCAGC------AGUUgc -5'
16219 3' -56 NC_004065.1 + 82983 0.68 0.926767
Target:  5'- cCUgGUCGcaGuCGACGGGG-CGUCGcACGa -3'
miRNA:   3'- -GAgCAGCa-C-GCUGCCCCaGCAGU-UGC- -5'
16219 3' -56 NC_004065.1 + 186738 0.68 0.921577
Target:  5'- gUCGUCGUcUGGuCGcGGGUCGaCGACGa -3'
miRNA:   3'- gAGCAGCAcGCU-GC-CCCAGCaGUUGC- -5'
16219 3' -56 NC_004065.1 + 116089 0.68 0.912822
Target:  5'- gCUCGUCGgccgagcucauccgGCGA-GGGGUgGUCGcCGg -3'
miRNA:   3'- -GAGCAGCa-------------CGCUgCCCCAgCAGUuGC- -5'
16219 3' -56 NC_004065.1 + 130188 0.68 0.910547
Target:  5'- aUC-UgGUGCGACGGGGcCGUgcucaugagCGACGg -3'
miRNA:   3'- gAGcAgCACGCUGCCCCaGCA---------GUUGC- -5'
16219 3' -56 NC_004065.1 + 202277 0.68 0.910547
Target:  5'- uCUCGaUGcGCGGCGGGGUCaUCAGa- -3'
miRNA:   3'- -GAGCaGCaCGCUGCCCCAGcAGUUgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.