miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16219 3' -56 NC_004065.1 + 1150 0.66 0.960541
Target:  5'- gCUCGU-GUGCGccGCGGuGGuccccauugugUCGUCGGCGc -3'
miRNA:   3'- -GAGCAgCACGC--UGCC-CC-----------AGCAGUUGC- -5'
16219 3' -56 NC_004065.1 + 6256 0.73 0.702018
Target:  5'- -cUGUCGUGCGGCGGGGaCGagagggagcCGACGa -3'
miRNA:   3'- gaGCAGCACGCUGCCCCaGCa--------GUUGC- -5'
16219 3' -56 NC_004065.1 + 11831 0.71 0.810776
Target:  5'- --aGUCG-GUGGCGGGGUCG--GACGg -3'
miRNA:   3'- gagCAGCaCGCUGCCCCAGCagUUGC- -5'
16219 3' -56 NC_004065.1 + 14249 0.68 0.93174
Target:  5'- gCUCuUCGaaaUG-GACGGGGaUCGUCAACu -3'
miRNA:   3'- -GAGcAGC---ACgCUGCCCC-AGCAGUUGc -5'
16219 3' -56 NC_004065.1 + 18295 0.66 0.960541
Target:  5'- cCUCGUCGaGCGGCuGGacGGUcCGUCuuCGg -3'
miRNA:   3'- -GAGCAGCaCGCUG-CC--CCA-GCAGuuGC- -5'
16219 3' -56 NC_004065.1 + 18516 0.66 0.969815
Target:  5'- gUCGUCGgacuccugGUGcACGGGaUCGUCAcCGg -3'
miRNA:   3'- gAGCAGCa-------CGC-UGCCCcAGCAGUuGC- -5'
16219 3' -56 NC_004065.1 + 19568 0.67 0.957055
Target:  5'- -gUGUCG-GUGGCGGcGGUagCGUCGGCu -3'
miRNA:   3'- gaGCAGCaCGCUGCC-CCA--GCAGUUGc -5'
16219 3' -56 NC_004065.1 + 19770 0.66 0.975059
Target:  5'- gUCGUCGauCGAUGGGcaguucgaGUCGUCcGCGg -3'
miRNA:   3'- gAGCAGCacGCUGCCC--------CAGCAGuUGC- -5'
16219 3' -56 NC_004065.1 + 21509 0.67 0.949466
Target:  5'- -cUGUCGUGaUGGCGGuGGUcCGUguGCGa -3'
miRNA:   3'- gaGCAGCAC-GCUGCC-CCA-GCAguUGC- -5'
16219 3' -56 NC_004065.1 + 27203 0.66 0.966917
Target:  5'- -gCGUCaugGCGGCGGucguGGUCGgCAGCGu -3'
miRNA:   3'- gaGCAGca-CGCUGCC----CCAGCaGUUGC- -5'
16219 3' -56 NC_004065.1 + 35622 0.67 0.953364
Target:  5'- -aCGgcggCGgcgGCGGCGGGGaUGUCAucgGCGa -3'
miRNA:   3'- gaGCa---GCa--CGCUGCCCCaGCAGU---UGC- -5'
16219 3' -56 NC_004065.1 + 41484 0.66 0.963827
Target:  5'- --aG-CGUGCGcCGGGG-CGUCGggACGg -3'
miRNA:   3'- gagCaGCACGCuGCCCCaGCAGU--UGC- -5'
16219 3' -56 NC_004065.1 + 41947 0.67 0.957055
Target:  5'- -gCGUCGUGCacGGCcGGGUUcUCGACGc -3'
miRNA:   3'- gaGCAGCACG--CUGcCCCAGcAGUUGC- -5'
16219 3' -56 NC_004065.1 + 44671 0.74 0.634117
Target:  5'- gUCGUCG-GCGACGaagcgauGGUCGUCGACc -3'
miRNA:   3'- gAGCAGCaCGCUGCc------CCAGCAGUUGc -5'
16219 3' -56 NC_004065.1 + 45092 0.66 0.966917
Target:  5'- uUCGaCGUGCagcuCGGGGUCcucCAGCGg -3'
miRNA:   3'- gAGCaGCACGcu--GCCCCAGca-GUUGC- -5'
16219 3' -56 NC_004065.1 + 55419 0.66 0.969534
Target:  5'- uCUCGUCGUggugGUGGCgugcuuccuagcgGGGGUCGcCGccGCGa -3'
miRNA:   3'- -GAGCAGCA----CGCUG-------------CCCCAGCaGU--UGC- -5'
16219 3' -56 NC_004065.1 + 57041 0.7 0.865303
Target:  5'- gCUCGUCGUcggcaCGACGGGcaaggcccCGUCAACGu -3'
miRNA:   3'- -GAGCAGCAc----GCUGCCCca------GCAGUUGC- -5'
16219 3' -56 NC_004065.1 + 62355 0.66 0.969815
Target:  5'- gUCGUCGguuuuCGACGGcGGUgG-CGGCGg -3'
miRNA:   3'- gAGCAGCac---GCUGCC-CCAgCaGUUGC- -5'
16219 3' -56 NC_004065.1 + 64196 0.66 0.960541
Target:  5'- --aGUCGcagGCGGCGGGcGgaggcagUGUCGGCGg -3'
miRNA:   3'- gagCAGCa--CGCUGCCC-Ca------GCAGUUGC- -5'
16219 3' -56 NC_004065.1 + 73114 0.66 0.960541
Target:  5'- cCUCGUCgGUGcCGGCGGaGGaUCGggacccCGACGc -3'
miRNA:   3'- -GAGCAG-CAC-GCUGCC-CC-AGCa-----GUUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.