miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16219 3' -56 NC_004065.1 + 77230 0.66 0.975059
Target:  5'- cCUCGUCGU----CGGaGGUCaGUCGACGu -3'
miRNA:   3'- -GAGCAGCAcgcuGCC-CCAG-CAGUUGC- -5'
16219 3' -56 NC_004065.1 + 78447 0.66 0.972265
Target:  5'- aCUCGUCGaugacgaugauguUGCuGCGGcagaGGUCGUCggUGu -3'
miRNA:   3'- -GAGCAGC-------------ACGcUGCC----CCAGCAGuuGC- -5'
16219 3' -56 NC_004065.1 + 82983 0.68 0.926767
Target:  5'- cCUgGUCGcaGuCGACGGGG-CGUCGcACGa -3'
miRNA:   3'- -GAgCAGCa-C-GCUGCCCCaGCAGU-UGC- -5'
16219 3' -56 NC_004065.1 + 88005 0.7 0.858041
Target:  5'- -cCGUCGUcGaCGACGacGUCGUCGACGa -3'
miRNA:   3'- gaGCAGCA-C-GCUGCccCAGCAGUUGC- -5'
16219 3' -56 NC_004065.1 + 91135 0.74 0.634117
Target:  5'- --aGUCG-GUGAUGGGGUCGUagaaGACGg -3'
miRNA:   3'- gagCAGCaCGCUGCCCCAGCAg---UUGC- -5'
16219 3' -56 NC_004065.1 + 91171 0.68 0.93174
Target:  5'- aUCGUCGcagGCGACGGccgcGGaagcgcCGUCGGCGu -3'
miRNA:   3'- gAGCAGCa--CGCUGCC----CCa-----GCAGUUGC- -5'
16219 3' -56 NC_004065.1 + 96143 0.68 0.926767
Target:  5'- -aCGUCGUcCGugGGGGUCGcgcuccUCAAg- -3'
miRNA:   3'- gaGCAGCAcGCugCCCCAGC------AGUUgc -5'
16219 3' -56 NC_004065.1 + 99848 0.67 0.953364
Target:  5'- -cCGUCGcaccagaugGCGcCGGGGUCGcggauagCGACGg -3'
miRNA:   3'- gaGCAGCa--------CGCuGCCCCAGCa------GUUGC- -5'
16219 3' -56 NC_004065.1 + 102548 0.79 0.387223
Target:  5'- cCUCGUCGgugGCGcCGGGGUCGggucccgcggccaUCAGCGu -3'
miRNA:   3'- -GAGCAGCa--CGCuGCCCCAGC-------------AGUUGC- -5'
16219 3' -56 NC_004065.1 + 104144 0.67 0.953364
Target:  5'- cCUCGUCGUcgccuuccGCGGCGGuGUCGgUCGcCGc -3'
miRNA:   3'- -GAGCAGCA--------CGCUGCCcCAGC-AGUuGC- -5'
16219 3' -56 NC_004065.1 + 106448 0.69 0.892393
Target:  5'- gCUCGUCGU-CGAUGcuGGG-CGUCGACc -3'
miRNA:   3'- -GAGCAGCAcGCUGC--CCCaGCAGUUGc -5'
16219 3' -56 NC_004065.1 + 109515 0.67 0.949064
Target:  5'- aUCGUCGaGCGGCgccaagagGGGGUCGaugaaccccggauUUAGCGa -3'
miRNA:   3'- gAGCAGCaCGCUG--------CCCCAGC-------------AGUUGC- -5'
16219 3' -56 NC_004065.1 + 109825 0.67 0.949466
Target:  5'- cCUCGUCGccguccugcUGCGGCGGGGg-GcCAucGCGc -3'
miRNA:   3'- -GAGCAGC---------ACGCUGCCCCagCaGU--UGC- -5'
16219 3' -56 NC_004065.1 + 111734 0.7 0.842966
Target:  5'- -cCGUCGccuucgccUGCGACGuGGUCGUCAaguACGu -3'
miRNA:   3'- gaGCAGC--------ACGCUGCcCCAGCAGU---UGC- -5'
16219 3' -56 NC_004065.1 + 115404 0.72 0.776229
Target:  5'- aUCGUCcc-CGGCGGGGUCG-UAGCGa -3'
miRNA:   3'- gAGCAGcacGCUGCCCCAGCaGUUGC- -5'
16219 3' -56 NC_004065.1 + 116089 0.68 0.912822
Target:  5'- gCUCGUCGgccgagcucauccgGCGA-GGGGUgGUCGcCGg -3'
miRNA:   3'- -GAGCAGCa-------------CGCUgCCCCAgCAGUuGC- -5'
16219 3' -56 NC_004065.1 + 120327 0.76 0.515868
Target:  5'- cCUCGUCGUGCuccGAgaaucucuccaccuCGGGGUaCGUCGGCGc -3'
miRNA:   3'- -GAGCAGCACG---CU--------------GCCCCA-GCAGUUGC- -5'
16219 3' -56 NC_004065.1 + 121070 0.67 0.941033
Target:  5'- -gCGUCGUGCccca-GGUCGUCGGCGu -3'
miRNA:   3'- gaGCAGCACGcugccCCAGCAGUUGC- -5'
16219 3' -56 NC_004065.1 + 127542 0.69 0.896799
Target:  5'- -cCGUCGccgugcccugcuacUGCGACGaguGGGaCGUCGACGa -3'
miRNA:   3'- gaGCAGC--------------ACGCUGC---CCCaGCAGUUGC- -5'
16219 3' -56 NC_004065.1 + 130188 0.68 0.910547
Target:  5'- aUC-UgGUGCGACGGGGcCGUgcucaugagCGACGg -3'
miRNA:   3'- gAGcAgCACGCUGCCCCaGCA---------GUUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.