miRNA display CGI


Results 41 - 60 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16219 3' -56 NC_004065.1 + 142016 0.71 0.802341
Target:  5'- aUCGUCGa-CGACGucGUCGUCGACGa -3'
miRNA:   3'- gAGCAGCacGCUGCccCAGCAGUUGC- -5'
16219 3' -56 NC_004065.1 + 143113 0.66 0.975059
Target:  5'- uUCG-CG-GCGcCGGgaaaGGUCGUCGACa -3'
miRNA:   3'- gAGCaGCaCGCuGCC----CCAGCAGUUGc -5'
16219 3' -56 NC_004065.1 + 145287 0.67 0.957055
Target:  5'- cCUCGcCGaGaCGACGGGGUaaCGUCGcCGc -3'
miRNA:   3'- -GAGCaGCaC-GCUGCCCCA--GCAGUuGC- -5'
16219 3' -56 NC_004065.1 + 159865 0.73 0.710614
Target:  5'- uCUCGUCGUGUGgguacguACGuGGGUCG-UAACGu -3'
miRNA:   3'- -GAGCAGCACGC-------UGC-CCCAGCaGUUGC- -5'
16219 3' -56 NC_004065.1 + 160808 0.69 0.885923
Target:  5'- uCUCGUUcaGCGACGGGauguucaccGUCGaCAGCGa -3'
miRNA:   3'- -GAGCAGcaCGCUGCCC---------CAGCaGUUGC- -5'
16219 3' -56 NC_004065.1 + 169726 0.68 0.936494
Target:  5'- aUCG-CGaccUGCacauCGGGGUCGUCGGCu -3'
miRNA:   3'- gAGCaGC---ACGcu--GCCCCAGCAGUUGc -5'
16219 3' -56 NC_004065.1 + 171969 0.67 0.957055
Target:  5'- -gCGgCGgcgGCGGCggaGGGGUCGUCGugaACGa -3'
miRNA:   3'- gaGCaGCa--CGCUG---CCCCAGCAGU---UGC- -5'
16219 3' -56 NC_004065.1 + 174639 0.69 0.87857
Target:  5'- -cCGUCGguUGCGGggugccggaggacUGGGGUCGUCGcCGg -3'
miRNA:   3'- gaGCAGC--ACGCU-------------GCCCCAGCAGUuGC- -5'
16219 3' -56 NC_004065.1 + 178500 0.7 0.865303
Target:  5'- aUCaUCGgacGCGACGGcGUCGUCAugGc -3'
miRNA:   3'- gAGcAGCa--CGCUGCCcCAGCAGUugC- -5'
16219 3' -56 NC_004065.1 + 186738 0.68 0.921577
Target:  5'- gUCGUCGUcUGGuCGcGGGUCGaCGACGa -3'
miRNA:   3'- gAGCAGCAcGCU-GC-CCCAGCaGUUGC- -5'
16219 3' -56 NC_004065.1 + 187909 0.66 0.972528
Target:  5'- -cCGUCGUGCGccaaaACGGucacGUaCGUCGGCGc -3'
miRNA:   3'- gaGCAGCACGC-----UGCCc---CA-GCAGUUGC- -5'
16219 3' -56 NC_004065.1 + 189857 0.71 0.826387
Target:  5'- gCUCGUCGccGCGA-GGGGUuugcugcCGUCGGCa -3'
miRNA:   3'- -GAGCAGCa-CGCUgCCCCA-------GCAGUUGc -5'
16219 3' -56 NC_004065.1 + 190294 0.66 0.966917
Target:  5'- uUCGUCG-GCGAUccGGUCG-CGGCGu -3'
miRNA:   3'- gAGCAGCaCGCUGccCCAGCaGUUGC- -5'
16219 3' -56 NC_004065.1 + 196228 0.66 0.969815
Target:  5'- ---cUCGUGCGACGGGaUCGcCAAg- -3'
miRNA:   3'- gagcAGCACGCUGCCCcAGCaGUUgc -5'
16219 3' -56 NC_004065.1 + 197473 0.69 0.893029
Target:  5'- uUUGUCGgcggauaccgccggcGCGACGGGGcCGUCAuCa -3'
miRNA:   3'- gAGCAGCa--------------CGCUGCCCCaGCAGUuGc -5'
16219 3' -56 NC_004065.1 + 200779 0.75 0.614595
Target:  5'- uCUCGUCGcGCGGCGGuGG-CGggCGACGg -3'
miRNA:   3'- -GAGCAGCaCGCUGCC-CCaGCa-GUUGC- -5'
16219 3' -56 NC_004065.1 + 202277 0.68 0.910547
Target:  5'- uCUCGaUGcGCGGCGGGGUCaUCAGa- -3'
miRNA:   3'- -GAGCaGCaCGCUGCCCCAGcAGUUgc -5'
16219 3' -56 NC_004065.1 + 203498 0.7 0.850594
Target:  5'- gUCGUCcuggcuGUGcCGGCGGGGUcCGUC-GCGu -3'
miRNA:   3'- gAGCAG------CAC-GCUGCCCCA-GCAGuUGC- -5'
16219 3' -56 NC_004065.1 + 204549 0.7 0.835164
Target:  5'- cCUCGUCGgGCGGCGGGaGgugcugcgCGUCuGCu -3'
miRNA:   3'- -GAGCAGCaCGCUGCCC-Ca-------GCAGuUGc -5'
16219 3' -56 NC_004065.1 + 207702 1.08 0.0063
Target:  5'- cCUCGUCGUGCGACGGGGUCGUCAACGu -3'
miRNA:   3'- -GAGCAGCACGCUGCCCCAGCAGUUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.