Results 61 - 64 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16219 | 3' | -56 | NC_004065.1 | + | 14249 | 0.68 | 0.93174 |
Target: 5'- gCUCuUCGaaaUG-GACGGGGaUCGUCAACu -3' miRNA: 3'- -GAGcAGC---ACgCUGCCCC-AGCAGUUGc -5' |
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16219 | 3' | -56 | NC_004065.1 | + | 11831 | 0.71 | 0.810776 |
Target: 5'- --aGUCG-GUGGCGGGGUCG--GACGg -3' miRNA: 3'- gagCAGCaCGCUGCCCCAGCagUUGC- -5' |
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16219 | 3' | -56 | NC_004065.1 | + | 6256 | 0.73 | 0.702018 |
Target: 5'- -cUGUCGUGCGGCGGGGaCGagagggagcCGACGa -3' miRNA: 3'- gaGCAGCACGCUGCCCCaGCa--------GUUGC- -5' |
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16219 | 3' | -56 | NC_004065.1 | + | 1150 | 0.66 | 0.960541 |
Target: 5'- gCUCGU-GUGCGccGCGGuGGuccccauugugUCGUCGGCGc -3' miRNA: 3'- -GAGCAgCACGC--UGCC-CC-----------AGCAGUUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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