miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16219 3' -56 NC_004065.1 + 41947 0.67 0.957055
Target:  5'- -gCGUCGUGCacGGCcGGGUUcUCGACGc -3'
miRNA:   3'- gaGCAGCACG--CUGcCCCAGcAGUUGC- -5'
16219 3' -56 NC_004065.1 + 116089 0.68 0.912822
Target:  5'- gCUCGUCGgccgagcucauccgGCGA-GGGGUgGUCGcCGg -3'
miRNA:   3'- -GAGCAGCa-------------CGCUgCCCCAgCAGUuGC- -5'
16219 3' -56 NC_004065.1 + 96143 0.68 0.926767
Target:  5'- -aCGUCGUcCGugGGGGUCGcgcuccUCAAg- -3'
miRNA:   3'- gaGCAGCAcGCugCCCCAGC------AGUUgc -5'
16219 3' -56 NC_004065.1 + 91171 0.68 0.93174
Target:  5'- aUCGUCGcagGCGACGGccgcGGaagcgcCGUCGGCGu -3'
miRNA:   3'- gAGCAGCa--CGCUGCC----CCa-----GCAGUUGC- -5'
16219 3' -56 NC_004065.1 + 109825 0.67 0.949466
Target:  5'- cCUCGUCGccguccugcUGCGGCGGGGg-GcCAucGCGc -3'
miRNA:   3'- -GAGCAGC---------ACGCUGCCCCagCaGU--UGC- -5'
16219 3' -56 NC_004065.1 + 210553 0.67 0.953364
Target:  5'- uUCGUUGUGUc-UGGGGUUGUcCAugGg -3'
miRNA:   3'- gAGCAGCACGcuGCCCCAGCA-GUugC- -5'
16219 3' -56 NC_004065.1 + 35622 0.67 0.953364
Target:  5'- -aCGgcggCGgcgGCGGCGGGGaUGUCAucgGCGa -3'
miRNA:   3'- gaGCa---GCa--CGCUGCCCCaGCAGU---UGC- -5'
16219 3' -56 NC_004065.1 + 104144 0.67 0.953364
Target:  5'- cCUCGUCGUcgccuuccGCGGCGGuGUCGgUCGcCGc -3'
miRNA:   3'- -GAGCAGCA--------CGCUGCCcCAGC-AGUuGC- -5'
16219 3' -56 NC_004065.1 + 19568 0.67 0.957055
Target:  5'- -gUGUCG-GUGGCGGcGGUagCGUCGGCu -3'
miRNA:   3'- gaGCAGCaCGCUGCC-CCA--GCAGUUGc -5'
16219 3' -56 NC_004065.1 + 130188 0.68 0.910547
Target:  5'- aUC-UgGUGCGACGGGGcCGUgcucaugagCGACGg -3'
miRNA:   3'- gAGcAgCACGCUGCCCCaGCA---------GUUGC- -5'
16219 3' -56 NC_004065.1 + 127542 0.69 0.896799
Target:  5'- -cCGUCGccgugcccugcuacUGCGACGaguGGGaCGUCGACGa -3'
miRNA:   3'- gaGCAGC--------------ACGCUGC---CCCaGCAGUUGC- -5'
16219 3' -56 NC_004065.1 + 174639 0.69 0.87857
Target:  5'- -cCGUCGguUGCGGggugccggaggacUGGGGUCGUCGcCGg -3'
miRNA:   3'- gaGCAGC--ACGCU-------------GCCCCAGCAGUuGC- -5'
16219 3' -56 NC_004065.1 + 120327 0.76 0.515868
Target:  5'- cCUCGUCGUGCuccGAgaaucucuccaccuCGGGGUaCGUCGGCGc -3'
miRNA:   3'- -GAGCAGCACG---CU--------------GCCCCA-GCAGUUGC- -5'
16219 3' -56 NC_004065.1 + 200779 0.75 0.614595
Target:  5'- uCUCGUCGcGCGGCGGuGG-CGggCGACGg -3'
miRNA:   3'- -GAGCAGCaCGCUGCC-CCaGCa-GUUGC- -5'
16219 3' -56 NC_004065.1 + 44671 0.74 0.634117
Target:  5'- gUCGUCG-GCGACGaagcgauGGUCGUCGACc -3'
miRNA:   3'- gAGCAGCaCGCUGCc------CCAGCAGUUGc -5'
16219 3' -56 NC_004065.1 + 159865 0.73 0.710614
Target:  5'- uCUCGUCGUGUGgguacguACGuGGGUCG-UAACGu -3'
miRNA:   3'- -GAGCAGCACGC-------UGC-CCCAGCaGUUGC- -5'
16219 3' -56 NC_004065.1 + 142016 0.71 0.802341
Target:  5'- aUCGUCGa-CGACGucGUCGUCGACGa -3'
miRNA:   3'- gAGCAGCacGCUGCccCAGCAGUUGC- -5'
16219 3' -56 NC_004065.1 + 189857 0.71 0.826387
Target:  5'- gCUCGUCGccGCGA-GGGGUuugcugcCGUCGGCa -3'
miRNA:   3'- -GAGCAGCa-CGCUgCCCCA-------GCAGUUGc -5'
16219 3' -56 NC_004065.1 + 111734 0.7 0.842966
Target:  5'- -cCGUCGccuucgccUGCGACGuGGUCGUCAaguACGu -3'
miRNA:   3'- gaGCAGC--------ACGCUGCcCCAGCAGU---UGC- -5'
16219 3' -56 NC_004065.1 + 57041 0.7 0.865303
Target:  5'- gCUCGUCGUcggcaCGACGGGcaaggcccCGUCAACGu -3'
miRNA:   3'- -GAGCAGCAc----GCUGCCCca------GCAGUUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.