miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16219 3' -56 NC_004065.1 + 159865 0.73 0.710614
Target:  5'- uCUCGUCGUGUGgguacguACGuGGGUCG-UAACGu -3'
miRNA:   3'- -GAGCAGCACGC-------UGC-CCCAGCaGUUGC- -5'
16219 3' -56 NC_004065.1 + 142016 0.71 0.802341
Target:  5'- aUCGUCGa-CGACGucGUCGUCGACGa -3'
miRNA:   3'- gAGCAGCacGCUGCccCAGCAGUUGC- -5'
16219 3' -56 NC_004065.1 + 189857 0.71 0.826387
Target:  5'- gCUCGUCGccGCGA-GGGGUuugcugcCGUCGGCa -3'
miRNA:   3'- -GAGCAGCa-CGCUgCCCCA-------GCAGUUGc -5'
16219 3' -56 NC_004065.1 + 111734 0.7 0.842966
Target:  5'- -cCGUCGccuucgccUGCGACGuGGUCGUCAaguACGu -3'
miRNA:   3'- gaGCAGC--------ACGCUGCcCCAGCAGU---UGC- -5'
16219 3' -56 NC_004065.1 + 116089 0.68 0.912822
Target:  5'- gCUCGUCGgccgagcucauccgGCGA-GGGGUgGUCGcCGg -3'
miRNA:   3'- -GAGCAGCa-------------CGCUgCCCCAgCAGUuGC- -5'
16219 3' -56 NC_004065.1 + 130188 0.68 0.910547
Target:  5'- aUC-UgGUGCGACGGGGcCGUgcucaugagCGACGg -3'
miRNA:   3'- gAGcAgCACGCUGCCCCaGCA---------GUUGC- -5'
16219 3' -56 NC_004065.1 + 127542 0.69 0.896799
Target:  5'- -cCGUCGccgugcccugcuacUGCGACGaguGGGaCGUCGACGa -3'
miRNA:   3'- gaGCAGC--------------ACGCUGC---CCCaGCAGUUGC- -5'
16219 3' -56 NC_004065.1 + 174639 0.69 0.87857
Target:  5'- -cCGUCGguUGCGGggugccggaggacUGGGGUCGUCGcCGg -3'
miRNA:   3'- gaGCAGC--ACGCU-------------GCCCCAGCAGUuGC- -5'
16219 3' -56 NC_004065.1 + 57041 0.7 0.865303
Target:  5'- gCUCGUCGUcggcaCGACGGGcaaggcccCGUCAACGu -3'
miRNA:   3'- -GAGCAGCAc----GCUGCCCca------GCAGUUGC- -5'
16219 3' -56 NC_004065.1 + 160808 0.69 0.885923
Target:  5'- uCUCGUUcaGCGACGGGauguucaccGUCGaCAGCGa -3'
miRNA:   3'- -GAGCAGcaCGCUGCCC---------CAGCaGUUGC- -5'
16219 3' -56 NC_004065.1 + 178500 0.7 0.865303
Target:  5'- aUCaUCGgacGCGACGGcGUCGUCAugGc -3'
miRNA:   3'- gAGcAGCa--CGCUGCCcCAGCAGUugC- -5'
16219 3' -56 NC_004065.1 + 88005 0.7 0.858041
Target:  5'- -cCGUCGUcGaCGACGacGUCGUCGACGa -3'
miRNA:   3'- gaGCAGCA-C-GCUGCccCAGCAGUUGC- -5'
16219 3' -56 NC_004065.1 + 203498 0.7 0.850594
Target:  5'- gUCGUCcuggcuGUGcCGGCGGGGUcCGUC-GCGu -3'
miRNA:   3'- gAGCAG------CAC-GCUGCCCCA-GCAGuUGC- -5'
16219 3' -56 NC_004065.1 + 204549 0.7 0.835164
Target:  5'- cCUCGUCGgGCGGCGGGaGgugcugcgCGUCuGCu -3'
miRNA:   3'- -GAGCAGCaCGCUGCCC-Ca-------GCAGuUGc -5'
16219 3' -56 NC_004065.1 + 210141 0.7 0.835164
Target:  5'- cCUCGgCG-GCGACGGGGUgGaUCAGgGu -3'
miRNA:   3'- -GAGCaGCaCGCUGCCCCAgC-AGUUgC- -5'
16219 3' -56 NC_004065.1 + 11831 0.71 0.810776
Target:  5'- --aGUCG-GUGGCGGGGUCG--GACGg -3'
miRNA:   3'- gagCAGCaCGCUGCCCCAGCagUUGC- -5'
16219 3' -56 NC_004065.1 + 115404 0.72 0.776229
Target:  5'- aUCGUCcc-CGGCGGGGUCG-UAGCGa -3'
miRNA:   3'- gAGCAGcacGCUGCCCCAGCaGUUGC- -5'
16219 3' -56 NC_004065.1 + 6256 0.73 0.702018
Target:  5'- -cUGUCGUGCGGCGGGGaCGagagggagcCGACGa -3'
miRNA:   3'- gaGCAGCACGCUGCCCCaGCa--------GUUGC- -5'
16219 3' -56 NC_004065.1 + 91135 0.74 0.634117
Target:  5'- --aGUCG-GUGAUGGGGUCGUagaaGACGg -3'
miRNA:   3'- gagCAGCaCGCUGCCCCAGCAg---UUGC- -5'
16219 3' -56 NC_004065.1 + 143113 0.66 0.975059
Target:  5'- uUCG-CG-GCGcCGGgaaaGGUCGUCGACa -3'
miRNA:   3'- gAGCaGCaCGCuGCC----CCAGCAGUUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.