miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16219 3' -56 NC_004065.1 + 102548 0.79 0.387223
Target:  5'- cCUCGUCGgugGCGcCGGGGUCGggucccgcggccaUCAGCGu -3'
miRNA:   3'- -GAGCAGCa--CGCuGCCCCAGC-------------AGUUGC- -5'
16219 3' -56 NC_004065.1 + 169726 0.68 0.936494
Target:  5'- aUCG-CGaccUGCacauCGGGGUCGUCGGCu -3'
miRNA:   3'- gAGCaGC---ACGcu--GCCCCAGCAGUUGc -5'
16219 3' -56 NC_004065.1 + 109515 0.67 0.949064
Target:  5'- aUCGUCGaGCGGCgccaagagGGGGUCGaugaaccccggauUUAGCGa -3'
miRNA:   3'- gAGCAGCaCGCUG--------CCCCAGC-------------AGUUGC- -5'
16219 3' -56 NC_004065.1 + 143113 0.66 0.975059
Target:  5'- uUCG-CG-GCGcCGGgaaaGGUCGUCGACa -3'
miRNA:   3'- gAGCaGCaCGCuGCC----CCAGCAGUUGc -5'
16219 3' -56 NC_004065.1 + 11831 0.71 0.810776
Target:  5'- --aGUCG-GUGGCGGGGUCG--GACGg -3'
miRNA:   3'- gagCAGCaCGCUGCCCCAGCagUUGC- -5'
16219 3' -56 NC_004065.1 + 210141 0.7 0.835164
Target:  5'- cCUCGgCG-GCGACGGGGUgGaUCAGgGu -3'
miRNA:   3'- -GAGCaGCaCGCUGCCCCAgC-AGUUgC- -5'
16219 3' -56 NC_004065.1 + 203498 0.7 0.850594
Target:  5'- gUCGUCcuggcuGUGcCGGCGGGGUcCGUC-GCGu -3'
miRNA:   3'- gAGCAG------CAC-GCUGCCCCA-GCAGuUGC- -5'
16219 3' -56 NC_004065.1 + 88005 0.7 0.858041
Target:  5'- -cCGUCGUcGaCGACGacGUCGUCGACGa -3'
miRNA:   3'- gaGCAGCA-C-GCUGCccCAGCAGUUGC- -5'
16219 3' -56 NC_004065.1 + 106448 0.69 0.892393
Target:  5'- gCUCGUCGU-CGAUGcuGGG-CGUCGACc -3'
miRNA:   3'- -GAGCAGCAcGCUGC--CCCaGCAGUUGc -5'
16219 3' -56 NC_004065.1 + 14249 0.68 0.93174
Target:  5'- gCUCuUCGaaaUG-GACGGGGaUCGUCAACu -3'
miRNA:   3'- -GAGcAGC---ACgCUGCCCC-AGCAGUUGc -5'
16219 3' -56 NC_004065.1 + 202277 0.68 0.910547
Target:  5'- uCUCGaUGcGCGGCGGGGUCaUCAGa- -3'
miRNA:   3'- -GAGCaGCaCGCUGCCCCAGcAGUUgc -5'
16219 3' -56 NC_004065.1 + 160808 0.69 0.885923
Target:  5'- uCUCGUUcaGCGACGGGauguucaccGUCGaCAGCGa -3'
miRNA:   3'- -GAGCAGcaCGCUGCCC---------CAGCaGUUGC- -5'
16219 3' -56 NC_004065.1 + 91135 0.74 0.634117
Target:  5'- --aGUCG-GUGAUGGGGUCGUagaaGACGg -3'
miRNA:   3'- gagCAGCaCGCUGCCCCAGCAg---UUGC- -5'
16219 3' -56 NC_004065.1 + 186738 0.68 0.921577
Target:  5'- gUCGUCGUcUGGuCGcGGGUCGaCGACGa -3'
miRNA:   3'- gAGCAGCAcGCU-GC-CCCAGCaGUUGC- -5'
16219 3' -56 NC_004065.1 + 6256 0.73 0.702018
Target:  5'- -cUGUCGUGCGGCGGGGaCGagagggagcCGACGa -3'
miRNA:   3'- gaGCAGCACGCUGCCCCaGCa--------GUUGC- -5'
16219 3' -56 NC_004065.1 + 178500 0.7 0.865303
Target:  5'- aUCaUCGgacGCGACGGcGUCGUCAugGc -3'
miRNA:   3'- gAGcAGCa--CGCUGCCcCAGCAGUugC- -5'
16219 3' -56 NC_004065.1 + 82983 0.68 0.926767
Target:  5'- cCUgGUCGcaGuCGACGGGG-CGUCGcACGa -3'
miRNA:   3'- -GAgCAGCa-C-GCUGCCCCaGCAGU-UGC- -5'
16219 3' -56 NC_004065.1 + 121070 0.67 0.941033
Target:  5'- -gCGUCGUGCccca-GGUCGUCGGCGu -3'
miRNA:   3'- gaGCAGCACGcugccCCAGCAGUUGC- -5'
16219 3' -56 NC_004065.1 + 115404 0.72 0.776229
Target:  5'- aUCGUCcc-CGGCGGGGUCG-UAGCGa -3'
miRNA:   3'- gAGCAGcacGCUGCCCCAGCaGUUGC- -5'
16219 3' -56 NC_004065.1 + 204549 0.7 0.835164
Target:  5'- cCUCGUCGgGCGGCGGGaGgugcugcgCGUCuGCu -3'
miRNA:   3'- -GAGCAGCaCGCUGCCC-Ca-------GCAGuUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.