miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16219 3' -56 NC_004065.1 + 171969 0.67 0.957055
Target:  5'- -gCGgCGgcgGCGGCggaGGGGUCGUCGugaACGa -3'
miRNA:   3'- gaGCaGCa--CGCUG---CCCCAGCAGU---UGC- -5'
16219 3' -56 NC_004065.1 + 121070 0.67 0.941033
Target:  5'- -gCGUCGUGCccca-GGUCGUCGGCGu -3'
miRNA:   3'- gaGCAGCACGcugccCCAGCAGUUGC- -5'
16219 3' -56 NC_004065.1 + 82983 0.68 0.926767
Target:  5'- cCUgGUCGcaGuCGACGGGG-CGUCGcACGa -3'
miRNA:   3'- -GAgCAGCa-C-GCUGCCCCaGCAGU-UGC- -5'
16219 3' -56 NC_004065.1 + 196228 0.66 0.969815
Target:  5'- ---cUCGUGCGACGGGaUCGcCAAg- -3'
miRNA:   3'- gagcAGCACGCUGCCCcAGCaGUUgc -5'
16219 3' -56 NC_004065.1 + 99848 0.67 0.953364
Target:  5'- -cCGUCGcaccagaugGCGcCGGGGUCGcggauagCGACGg -3'
miRNA:   3'- gaGCAGCa--------CGCuGCCCCAGCa------GUUGC- -5'
16219 3' -56 NC_004065.1 + 186738 0.68 0.921577
Target:  5'- gUCGUCGUcUGGuCGcGGGUCGaCGACGa -3'
miRNA:   3'- gAGCAGCAcGCU-GC-CCCAGCaGUUGC- -5'
16219 3' -56 NC_004065.1 + 18516 0.66 0.969815
Target:  5'- gUCGUCGgacuccugGUGcACGGGaUCGUCAcCGg -3'
miRNA:   3'- gAGCAGCa-------CGC-UGCCCcAGCAGUuGC- -5'
16219 3' -56 NC_004065.1 + 202277 0.68 0.910547
Target:  5'- uCUCGaUGcGCGGCGGGGUCaUCAGa- -3'
miRNA:   3'- -GAGCaGCaCGCUGCCCCAGcAGUUgc -5'
16219 3' -56 NC_004065.1 + 27203 0.66 0.966917
Target:  5'- -gCGUCaugGCGGCGGucguGGUCGgCAGCGu -3'
miRNA:   3'- gaGCAGca-CGCUGCC----CCAGCaGUUGC- -5'
16219 3' -56 NC_004065.1 + 78447 0.66 0.972265
Target:  5'- aCUCGUCGaugacgaugauguUGCuGCGGcagaGGUCGUCggUGu -3'
miRNA:   3'- -GAGCAGC-------------ACGcUGCC----CCAGCAGuuGC- -5'
16219 3' -56 NC_004065.1 + 197473 0.69 0.893029
Target:  5'- uUUGUCGgcggauaccgccggcGCGACGGGGcCGUCAuCa -3'
miRNA:   3'- gAGCAGCa--------------CGCUGCCCCaGCAGUuGc -5'
16219 3' -56 NC_004065.1 + 109515 0.67 0.949064
Target:  5'- aUCGUCGaGCGGCgccaagagGGGGUCGaugaaccccggauUUAGCGa -3'
miRNA:   3'- gAGCAGCaCGCUG--------CCCCAGC-------------AGUUGC- -5'
16219 3' -56 NC_004065.1 + 169726 0.68 0.936494
Target:  5'- aUCG-CGaccUGCacauCGGGGUCGUCGGCu -3'
miRNA:   3'- gAGCaGC---ACGcu--GCCCCAGCAGUUGc -5'
16219 3' -56 NC_004065.1 + 77230 0.66 0.975059
Target:  5'- cCUCGUCGU----CGGaGGUCaGUCGACGu -3'
miRNA:   3'- -GAGCAGCAcgcuGCC-CCAG-CAGUUGC- -5'
16219 3' -56 NC_004065.1 + 14249 0.68 0.93174
Target:  5'- gCUCuUCGaaaUG-GACGGGGaUCGUCAACu -3'
miRNA:   3'- -GAGcAGC---ACgCUGCCCC-AGCAGUUGc -5'
16219 3' -56 NC_004065.1 + 91171 0.68 0.93174
Target:  5'- aUCGUCGcagGCGACGGccgcGGaagcgcCGUCGGCGu -3'
miRNA:   3'- gAGCAGCa--CGCUGCC----CCa-----GCAGUUGC- -5'
16219 3' -56 NC_004065.1 + 96143 0.68 0.926767
Target:  5'- -aCGUCGUcCGugGGGGUCGcgcuccUCAAg- -3'
miRNA:   3'- gaGCAGCAcGCugCCCCAGC------AGUUgc -5'
16219 3' -56 NC_004065.1 + 189857 0.71 0.826387
Target:  5'- gCUCGUCGccGCGA-GGGGUuugcugcCGUCGGCa -3'
miRNA:   3'- -GAGCAGCa-CGCUgCCCCA-------GCAGUUGc -5'
16219 3' -56 NC_004065.1 + 41484 0.66 0.963827
Target:  5'- --aG-CGUGCGcCGGGG-CGUCGggACGg -3'
miRNA:   3'- gagCaGCACGCuGCCCCaGCAGU--UGC- -5'
16219 3' -56 NC_004065.1 + 45092 0.66 0.966917
Target:  5'- uUCGaCGUGCagcuCGGGGUCcucCAGCGg -3'
miRNA:   3'- gAGCaGCACGcu--GCCCCAGca-GUUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.