miRNA display CGI


Results 41 - 60 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16219 3' -56 NC_004065.1 + 111734 0.7 0.842966
Target:  5'- -cCGUCGccuucgccUGCGACGuGGUCGUCAaguACGu -3'
miRNA:   3'- gaGCAGC--------ACGCUGCcCCAGCAGU---UGC- -5'
16219 3' -56 NC_004065.1 + 189857 0.71 0.826387
Target:  5'- gCUCGUCGccGCGA-GGGGUuugcugcCGUCGGCa -3'
miRNA:   3'- -GAGCAGCa-CGCUgCCCCA-------GCAGUUGc -5'
16219 3' -56 NC_004065.1 + 142016 0.71 0.802341
Target:  5'- aUCGUCGa-CGACGucGUCGUCGACGa -3'
miRNA:   3'- gAGCAGCacGCUGCccCAGCAGUUGC- -5'
16219 3' -56 NC_004065.1 + 159865 0.73 0.710614
Target:  5'- uCUCGUCGUGUGgguacguACGuGGGUCG-UAACGu -3'
miRNA:   3'- -GAGCAGCACGC-------UGC-CCCAGCaGUUGC- -5'
16219 3' -56 NC_004065.1 + 200779 0.75 0.614595
Target:  5'- uCUCGUCGcGCGGCGGuGG-CGggCGACGg -3'
miRNA:   3'- -GAGCAGCaCGCUGCC-CCaGCa-GUUGC- -5'
16219 3' -56 NC_004065.1 + 96143 0.68 0.926767
Target:  5'- -aCGUCGUcCGugGGGGUCGcgcuccUCAAg- -3'
miRNA:   3'- gaGCAGCAcGCugCCCCAGC------AGUUgc -5'
16219 3' -56 NC_004065.1 + 91171 0.68 0.93174
Target:  5'- aUCGUCGcagGCGACGGccgcGGaagcgcCGUCGGCGu -3'
miRNA:   3'- gAGCAGCa--CGCUGCC----CCa-----GCAGUUGC- -5'
16219 3' -56 NC_004065.1 + 45092 0.66 0.966917
Target:  5'- uUCGaCGUGCagcuCGGGGUCcucCAGCGg -3'
miRNA:   3'- gAGCaGCACGcu--GCCCCAGca-GUUGC- -5'
16219 3' -56 NC_004065.1 + 41484 0.66 0.963827
Target:  5'- --aG-CGUGCGcCGGGG-CGUCGggACGg -3'
miRNA:   3'- gagCaGCACGCuGCCCCaGCAGU--UGC- -5'
16219 3' -56 NC_004065.1 + 73114 0.66 0.960541
Target:  5'- cCUCGUCgGUGcCGGCGGaGGaUCGggacccCGACGc -3'
miRNA:   3'- -GAGCAG-CAC-GCUGCC-CC-AGCa-----GUUGC- -5'
16219 3' -56 NC_004065.1 + 1150 0.66 0.960541
Target:  5'- gCUCGU-GUGCGccGCGGuGGuccccauugugUCGUCGGCGc -3'
miRNA:   3'- -GAGCAgCACGC--UGCC-CC-----------AGCAGUUGC- -5'
16219 3' -56 NC_004065.1 + 145287 0.67 0.957055
Target:  5'- cCUCGcCGaGaCGACGGGGUaaCGUCGcCGc -3'
miRNA:   3'- -GAGCaGCaC-GCUGCCCCA--GCAGUuGC- -5'
16219 3' -56 NC_004065.1 + 64196 0.66 0.960541
Target:  5'- --aGUCGcagGCGGCGGGcGgaggcagUGUCGGCGg -3'
miRNA:   3'- gagCAGCa--CGCUGCCC-Ca------GCAGUUGC- -5'
16219 3' -56 NC_004065.1 + 225936 0.67 0.957055
Target:  5'- -cCGUCGUcucccGCGGCGGGuGUUGcUCGuACGa -3'
miRNA:   3'- gaGCAGCA-----CGCUGCCC-CAGC-AGU-UGC- -5'
16219 3' -56 NC_004065.1 + 41947 0.67 0.957055
Target:  5'- -gCGUCGUGCacGGCcGGGUUcUCGACGc -3'
miRNA:   3'- gaGCAGCACG--CUGcCCCAGcAGUUGC- -5'
16219 3' -56 NC_004065.1 + 19568 0.67 0.957055
Target:  5'- -gUGUCG-GUGGCGGcGGUagCGUCGGCu -3'
miRNA:   3'- gaGCAGCaCGCUGCC-CCA--GCAGUUGc -5'
16219 3' -56 NC_004065.1 + 104144 0.67 0.953364
Target:  5'- cCUCGUCGUcgccuuccGCGGCGGuGUCGgUCGcCGc -3'
miRNA:   3'- -GAGCAGCA--------CGCUGCCcCAGC-AGUuGC- -5'
16219 3' -56 NC_004065.1 + 35622 0.67 0.953364
Target:  5'- -aCGgcggCGgcgGCGGCGGGGaUGUCAucgGCGa -3'
miRNA:   3'- gaGCa---GCa--CGCUGCCCCaGCAGU---UGC- -5'
16219 3' -56 NC_004065.1 + 210553 0.67 0.953364
Target:  5'- uUCGUUGUGUc-UGGGGUUGUcCAugGg -3'
miRNA:   3'- gAGCAGCACGcuGCCCCAGCA-GUugC- -5'
16219 3' -56 NC_004065.1 + 109825 0.67 0.949466
Target:  5'- cCUCGUCGccguccugcUGCGGCGGGGg-GcCAucGCGc -3'
miRNA:   3'- -GAGCAGC---------ACGCUGCCCCagCaGU--UGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.