miRNA display CGI


Results 1 - 20 of 161 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16219 5' -51.1 NC_004065.1 + 29704 0.66 0.999076
Target:  5'- aUCGCCGGuCGAgCGGcgGACGCcgcccaGGACg -3'
miRNA:   3'- gGGUGGCU-GCUaGCUuaCUGUG------UCUG- -5'
16219 5' -51.1 NC_004065.1 + 147096 0.66 0.999076
Target:  5'- aUUACCGGCGGaggacuccgauuUCGAGUacugacggccGACAUGGACa -3'
miRNA:   3'- gGGUGGCUGCU------------AGCUUA----------CUGUGUCUG- -5'
16219 5' -51.1 NC_004065.1 + 170339 0.66 0.999076
Target:  5'- gCCCuucuaCGACGAcUCGGAcGACGaGGACg -3'
miRNA:   3'- -GGGug---GCUGCU-AGCUUaCUGUgUCUG- -5'
16219 5' -51.1 NC_004065.1 + 62393 0.66 0.999076
Target:  5'- uCCCGCCGACGAgcauccCGuaccUGAcCACAcuaacGACa -3'
miRNA:   3'- -GGGUGGCUGCUa-----GCuu--ACU-GUGU-----CUG- -5'
16219 5' -51.1 NC_004065.1 + 7312 0.66 0.999076
Target:  5'- gCUC-CUGACGAUCGAgccgGUGGUACcGGACg -3'
miRNA:   3'- -GGGuGGCUGCUAGCU----UACUGUG-UCUG- -5'
16219 5' -51.1 NC_004065.1 + 81032 0.66 0.999076
Target:  5'- --gACUGGCGAaaUCGAAc-ACGCAGACg -3'
miRNA:   3'- gggUGGCUGCU--AGCUUacUGUGUCUG- -5'
16219 5' -51.1 NC_004065.1 + 70068 0.66 0.999076
Target:  5'- aUCGCCG-CGAUCcucaaaGGCGCGGACc -3'
miRNA:   3'- gGGUGGCuGCUAGcuua--CUGUGUCUG- -5'
16219 5' -51.1 NC_004065.1 + 186652 0.66 0.999058
Target:  5'- gCCGCCGAuacgucgucgacuCGGaCGAGUGuCGgGGACg -3'
miRNA:   3'- gGGUGGCU-------------GCUaGCUUACuGUgUCUG- -5'
16219 5' -51.1 NC_004065.1 + 104320 0.66 0.999058
Target:  5'- gCCCGCCccaggggGAUGAUCGggUcagGGCGCucugccGGCg -3'
miRNA:   3'- -GGGUGG-------CUGCUAGCuuA---CUGUGu-----CUG- -5'
16219 5' -51.1 NC_004065.1 + 109325 0.66 0.999003
Target:  5'- cUCCACCGAuuuccgcggggagcUGGUCGAgaccaucuucaacGUGAguCAGGCc -3'
miRNA:   3'- -GGGUGGCU--------------GCUAGCU-------------UACUguGUCUG- -5'
16219 5' -51.1 NC_004065.1 + 16180 0.66 0.998883
Target:  5'- aCCCGCC-AUGAaucuagCGggUGAUGguGACu -3'
miRNA:   3'- -GGGUGGcUGCUa-----GCuuACUGUguCUG- -5'
16219 5' -51.1 NC_004065.1 + 145550 0.66 0.998883
Target:  5'- gUgGCCGACGGagaUCGcgucGUGAC-CAGACu -3'
miRNA:   3'- gGgUGGCUGCU---AGCu---UACUGuGUCUG- -5'
16219 5' -51.1 NC_004065.1 + 68634 0.66 0.998883
Target:  5'- --aGCUGGCG-UCGc-UGGCACAGGCg -3'
miRNA:   3'- gggUGGCUGCuAGCuuACUGUGUCUG- -5'
16219 5' -51.1 NC_004065.1 + 184785 0.66 0.998883
Target:  5'- aCgACgCGACGggCGGAggagGACGguGACg -3'
miRNA:   3'- gGgUG-GCUGCuaGCUUa---CUGUguCUG- -5'
16219 5' -51.1 NC_004065.1 + 65561 0.66 0.998883
Target:  5'- gUCGCCGGCGGgucgCGAGUaccuguaccgcGACGCGG-Cg -3'
miRNA:   3'- gGGUGGCUGCUa---GCUUA-----------CUGUGUCuG- -5'
16219 5' -51.1 NC_004065.1 + 128511 0.66 0.998655
Target:  5'- cUCCACCGACGA-CGAugccuccgcggcGUcGACGgAGAg -3'
miRNA:   3'- -GGGUGGCUGCUaGCU------------UA-CUGUgUCUg -5'
16219 5' -51.1 NC_004065.1 + 17655 0.66 0.998655
Target:  5'- -gCACCGGa-GUCGGAUGACgACcGACg -3'
miRNA:   3'- ggGUGGCUgcUAGCUUACUG-UGuCUG- -5'
16219 5' -51.1 NC_004065.1 + 19794 0.66 0.998655
Target:  5'- gUCguCCG-CGGUCGucucGUGGCACAGGg -3'
miRNA:   3'- -GGguGGCuGCUAGCu---UACUGUGUCUg -5'
16219 5' -51.1 NC_004065.1 + 151381 0.66 0.998655
Target:  5'- -gCGCUGGCGGccgaucucUUGggUGGCGgAGGCg -3'
miRNA:   3'- ggGUGGCUGCU--------AGCuuACUGUgUCUG- -5'
16219 5' -51.1 NC_004065.1 + 165206 0.66 0.998655
Target:  5'- -aCGuuGGCGggCGAgauGUGGCGCAGcACg -3'
miRNA:   3'- ggGUggCUGCuaGCU---UACUGUGUC-UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.