miRNA display CGI


Results 41 - 60 of 161 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16219 5' -51.1 NC_004065.1 + 193488 0.67 0.99631
Target:  5'- cCCCGaugUCGGCGGUCGAGuaguuccaccUGGCGgAGAa -3'
miRNA:   3'- -GGGU---GGCUGCUAGCUU----------ACUGUgUCUg -5'
16219 5' -51.1 NC_004065.1 + 154130 0.67 0.997315
Target:  5'- gUCCACauggGACGAUCGccccgGGCGguGGCg -3'
miRNA:   3'- -GGGUGg---CUGCUAGCuua--CUGUguCUG- -5'
16219 5' -51.1 NC_004065.1 + 133100 0.67 0.997725
Target:  5'- gCCGCgCGACGGUa-AGUGAgGCAGGu -3'
miRNA:   3'- gGGUG-GCUGCUAgcUUACUgUGUCUg -5'
16219 5' -51.1 NC_004065.1 + 139376 0.67 0.997725
Target:  5'- aCCACCGACGAcgCGGucUGAUGgGGuCg -3'
miRNA:   3'- gGGUGGCUGCUa-GCUu-ACUGUgUCuG- -5'
16219 5' -51.1 NC_004065.1 + 169971 0.67 0.995701
Target:  5'- -gUACCGACGGguUCGGAUucgggGACGguGACg -3'
miRNA:   3'- ggGUGGCUGCU--AGCUUA-----CUGUguCUG- -5'
16219 5' -51.1 NC_004065.1 + 43138 0.67 0.995701
Target:  5'- aCCGCCGGCcg-CGGAaGACACgcgcacGGACg -3'
miRNA:   3'- gGGUGGCUGcuaGCUUaCUGUG------UCUG- -5'
16219 5' -51.1 NC_004065.1 + 100145 0.67 0.99631
Target:  5'- cUCCAgCCGAUGAgcauc-GACGCAGGCg -3'
miRNA:   3'- -GGGU-GGCUGCUagcuuaCUGUGUCUG- -5'
16219 5' -51.1 NC_004065.1 + 27903 0.67 0.995701
Target:  5'- uCCUGCCGACGggCGAGUGGguggucgugUugGGGg -3'
miRNA:   3'- -GGGUGGCUGCuaGCUUACU---------GugUCUg -5'
16219 5' -51.1 NC_004065.1 + 105384 0.67 0.997725
Target:  5'- aCUCGCUGACGGccggCGAGgaGGCGCuGACc -3'
miRNA:   3'- -GGGUGGCUGCUa---GCUUa-CUGUGuCUG- -5'
16219 5' -51.1 NC_004065.1 + 23057 0.67 0.996795
Target:  5'- aCUACCuGACguucagagugaagGAUCGGAgaGACGCGGACc -3'
miRNA:   3'- gGGUGG-CUG-------------CUAGCUUa-CUGUGUCUG- -5'
16219 5' -51.1 NC_004065.1 + 185758 0.67 0.996845
Target:  5'- gCCCACaUGugGggCGucUGGCACAG-Ca -3'
miRNA:   3'- -GGGUG-GCugCuaGCuuACUGUGUCuG- -5'
16219 5' -51.1 NC_004065.1 + 203621 0.67 0.996845
Target:  5'- gCCGCCGugGcggaGUUGGA-GGCGgGGGCa -3'
miRNA:   3'- gGGUGGCugC----UAGCUUaCUGUgUCUG- -5'
16219 5' -51.1 NC_004065.1 + 63083 0.67 0.99631
Target:  5'- gUCGCCGGCGAgCGAcgGGCguuGGACc -3'
miRNA:   3'- gGGUGGCUGCUaGCUuaCUGug-UCUG- -5'
16219 5' -51.1 NC_004065.1 + 38960 0.67 0.996845
Target:  5'- gCgACCGGCGcggggguucugGUgGAagGUGACGCAGAUg -3'
miRNA:   3'- gGgUGGCUGC-----------UAgCU--UACUGUGUCUG- -5'
16219 5' -51.1 NC_004065.1 + 111613 0.67 0.99631
Target:  5'- uUCGCCGGCGAgaUCGAucccGACGCcgaAGAUg -3'
miRNA:   3'- gGGUGGCUGCU--AGCUua--CUGUG---UCUG- -5'
16219 5' -51.1 NC_004065.1 + 28888 0.67 0.997725
Target:  5'- aCUGCUGGCGccccgaGUCGGcgGACaagGCGGACa -3'
miRNA:   3'- gGGUGGCUGC------UAGCUuaCUG---UGUCUG- -5'
16219 5' -51.1 NC_004065.1 + 30698 0.67 0.997725
Target:  5'- gUCCGuCgCGACG-UCGAG-GugGCGGACg -3'
miRNA:   3'- -GGGU-G-GCUGCuAGCUUaCugUGUCUG- -5'
16219 5' -51.1 NC_004065.1 + 88432 0.67 0.995504
Target:  5'- gCCCGCCGccgucgcguuggugGCGGUCGccucGCGCAGAg -3'
miRNA:   3'- -GGGUGGC--------------UGCUAGCuuacUGUGUCUg -5'
16219 5' -51.1 NC_004065.1 + 200845 0.67 0.995636
Target:  5'- aCCCGguggaguUCGGCG-UCGAcgggGGCGCGGGCg -3'
miRNA:   3'- -GGGU-------GGCUGCuAGCUua--CUGUGUCUG- -5'
16219 5' -51.1 NC_004065.1 + 159480 0.67 0.995701
Target:  5'- gCguUCGGCGGagaCGGAUGGCGCGGAUu -3'
miRNA:   3'- gGguGGCUGCUa--GCUUACUGUGUCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.