miRNA display CGI


Results 61 - 80 of 161 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16219 5' -51.1 NC_004065.1 + 80880 0.67 0.997315
Target:  5'- gCCCcCCGACGAagaucaggcgacUCGAcgaaacGACAcCAGGCa -3'
miRNA:   3'- -GGGuGGCUGCU------------AGCUua----CUGU-GUCUG- -5'
16219 5' -51.1 NC_004065.1 + 205428 0.67 0.996845
Target:  5'- -aCACCGGCGG-CGGcgGugGCGgcGACg -3'
miRNA:   3'- ggGUGGCUGCUaGCUuaCugUGU--CUG- -5'
16219 5' -51.1 NC_004065.1 + 38960 0.67 0.996845
Target:  5'- gCgACCGGCGcggggguucugGUgGAagGUGACGCAGAUg -3'
miRNA:   3'- gGgUGGCUGC-----------UAgCU--UACUGUGUCUG- -5'
16219 5' -51.1 NC_004065.1 + 78315 0.67 0.996845
Target:  5'- -aCugCGugGG-CGAcccGACGCAGACg -3'
miRNA:   3'- ggGugGCugCUaGCUua-CUGUGUCUG- -5'
16219 5' -51.1 NC_004065.1 + 88432 0.67 0.995504
Target:  5'- gCCCGCCGccgucgcguuggugGCGGUCGccucGCGCAGAg -3'
miRNA:   3'- -GGGUGGC--------------UGCUAGCuuacUGUGUCUg -5'
16219 5' -51.1 NC_004065.1 + 200845 0.67 0.995636
Target:  5'- aCCCGguggaguUCGGCG-UCGAcgggGGCGCGGGCg -3'
miRNA:   3'- -GGGU-------GGCUGCuAGCUua--CUGUGUCUG- -5'
16219 5' -51.1 NC_004065.1 + 159480 0.67 0.995701
Target:  5'- gCguUCGGCGGagaCGGAUGGCGCGGAUu -3'
miRNA:   3'- gGguGGCUGCUa--GCUUACUGUGUCUG- -5'
16219 5' -51.1 NC_004065.1 + 43138 0.67 0.995701
Target:  5'- aCCGCCGGCcg-CGGAaGACACgcgcacGGACg -3'
miRNA:   3'- gGGUGGCUGcuaGCUUaCUGUG------UCUG- -5'
16219 5' -51.1 NC_004065.1 + 154130 0.67 0.997315
Target:  5'- gUCCACauggGACGAUCGccccgGGCGguGGCg -3'
miRNA:   3'- -GGGUGg---CUGCUAGCuua--CUGUguCUG- -5'
16219 5' -51.1 NC_004065.1 + 169971 0.67 0.995701
Target:  5'- -gUACCGACGGguUCGGAUucgggGACGguGACg -3'
miRNA:   3'- ggGUGGCUGCU--AGCUUA-----CUGUguCUG- -5'
16219 5' -51.1 NC_004065.1 + 80976 0.67 0.99631
Target:  5'- cUCCACCaaGAgGGUgGAGUaGCACAGAUu -3'
miRNA:   3'- -GGGUGG--CUgCUAgCUUAcUGUGUCUG- -5'
16219 5' -51.1 NC_004065.1 + 150713 0.67 0.995701
Target:  5'- aCCGCCGcCGGUgGGA-GGCcCAGGCc -3'
miRNA:   3'- gGGUGGCuGCUAgCUUaCUGuGUCUG- -5'
16219 5' -51.1 NC_004065.1 + 149014 0.67 0.996252
Target:  5'- -gCugCGGCGAUCGGAaccucgggcUGACcucgggaGCGGGCg -3'
miRNA:   3'- ggGugGCUGCUAGCUU---------ACUG-------UGUCUG- -5'
16219 5' -51.1 NC_004065.1 + 189127 0.68 0.995013
Target:  5'- cUCCACCGugGccCGGAccaACAUAGGCg -3'
miRNA:   3'- -GGGUGGCugCuaGCUUac-UGUGUCUG- -5'
16219 5' -51.1 NC_004065.1 + 75957 0.68 0.994239
Target:  5'- aCUCugCG-CGAUCcAggGACACGGAUg -3'
miRNA:   3'- -GGGugGCuGCUAGcUuaCUGUGUCUG- -5'
16219 5' -51.1 NC_004065.1 + 80395 0.68 0.994239
Target:  5'- gCCUGCCGACGG-CGccGGUGACGguGgACg -3'
miRNA:   3'- -GGGUGGCUGCUaGC--UUACUGUguC-UG- -5'
16219 5' -51.1 NC_004065.1 + 385 0.68 0.994239
Target:  5'- gCCGCCGGCcg--GGAUGGCGCAcgaGACg -3'
miRNA:   3'- gGGUGGCUGcuagCUUACUGUGU---CUG- -5'
16219 5' -51.1 NC_004065.1 + 190174 0.68 0.99337
Target:  5'- aCgAUCGACGAUCGcGcgGACAgAGAa -3'
miRNA:   3'- gGgUGGCUGCUAGC-UuaCUGUgUCUg -5'
16219 5' -51.1 NC_004065.1 + 198037 0.68 0.992399
Target:  5'- gUCGCCGGCGGUUccaaggGGAUGGaguuGCGGACg -3'
miRNA:   3'- gGGUGGCUGCUAG------CUUACUg---UGUCUG- -5'
16219 5' -51.1 NC_004065.1 + 197734 0.68 0.992399
Target:  5'- gCU-CCGACGAggagacCGAG-GACGCGGACa -3'
miRNA:   3'- gGGuGGCUGCUa-----GCUUaCUGUGUCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.