miRNA display CGI


Results 1 - 20 of 161 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16219 5' -51.1 NC_004065.1 + 207739 1.11 0.01085
Target:  5'- cCCCACCGACGAUCGAAUGACACAGACc -3'
miRNA:   3'- -GGGUGGCUGCUAGCUUACUGUGUCUG- -5'
16219 5' -51.1 NC_004065.1 + 172579 0.79 0.67666
Target:  5'- gCCCGCCGACGcuaaGAAaagaGACACAGACc -3'
miRNA:   3'- -GGGUGGCUGCuag-CUUa---CUGUGUCUG- -5'
16219 5' -51.1 NC_004065.1 + 101456 0.77 0.755416
Target:  5'- gCCGCCGACG-UCGcugccgcuGcgGGCGCAGACa -3'
miRNA:   3'- gGGUGGCUGCuAGC--------UuaCUGUGUCUG- -5'
16219 5' -51.1 NC_004065.1 + 70825 0.77 0.764872
Target:  5'- uCCUGgCGGCGAUCGAAgagaagaaaGACGCGGACc -3'
miRNA:   3'- -GGGUgGCUGCUAGCUUa--------CUGUGUCUG- -5'
16219 5' -51.1 NC_004065.1 + 67337 0.77 0.774213
Target:  5'- aCCCGCCGG---UCGAAUGGCGCuccGGACg -3'
miRNA:   3'- -GGGUGGCUgcuAGCUUACUGUG---UCUG- -5'
16219 5' -51.1 NC_004065.1 + 30759 0.76 0.783428
Target:  5'- gCCCucggaauCCGA-GGUCGGcgGACGCGGACg -3'
miRNA:   3'- -GGGu------GGCUgCUAGCUuaCUGUGUCUG- -5'
16219 5' -51.1 NC_004065.1 + 171922 0.76 0.818865
Target:  5'- aCCACCGA-GAUCGAuacGAuCGCGGACg -3'
miRNA:   3'- gGGUGGCUgCUAGCUua-CU-GUGUCUG- -5'
16219 5' -51.1 NC_004065.1 + 79321 0.75 0.851633
Target:  5'- uCCCACCGGCGG-CGGuucGUGcGCGCGGAg -3'
miRNA:   3'- -GGGUGGCUGCUaGCU---UAC-UGUGUCUg -5'
16219 5' -51.1 NC_004065.1 + 130168 0.75 0.851633
Target:  5'- cCUCGCacggCGGCGAUCGg--GGCGCAGACg -3'
miRNA:   3'- -GGGUG----GCUGCUAGCuuaCUGUGUCUG- -5'
16219 5' -51.1 NC_004065.1 + 50865 0.75 0.859352
Target:  5'- gCCuCUGACGGagagaUCGAcgGGCACGGGCg -3'
miRNA:   3'- gGGuGGCUGCU-----AGCUuaCUGUGUCUG- -5'
16219 5' -51.1 NC_004065.1 + 36620 0.74 0.874177
Target:  5'- cCCCACCGAUGA-CGAucuggggcAUGAgGCAGGg -3'
miRNA:   3'- -GGGUGGCUGCUaGCU--------UACUgUGUCUg -5'
16219 5' -51.1 NC_004065.1 + 147703 0.73 0.905596
Target:  5'- aCCCACCGGC--UCGGAUGAgcuggacgccgcgcUACGGGCc -3'
miRNA:   3'- -GGGUGGCUGcuAGCUUACU--------------GUGUCUG- -5'
16219 5' -51.1 NC_004065.1 + 7611 0.73 0.907432
Target:  5'- cCUUGCCGACGAUCGAAUGucgacccgucCACGuGGCg -3'
miRNA:   3'- -GGGUGGCUGCUAGCUUACu---------GUGU-CUG- -5'
16219 5' -51.1 NC_004065.1 + 30789 0.73 0.913399
Target:  5'- -nCGCCGACGAUgaCGAcUGACggACGGACg -3'
miRNA:   3'- ggGUGGCUGCUA--GCUuACUG--UGUCUG- -5'
16219 5' -51.1 NC_004065.1 + 22604 0.73 0.913399
Target:  5'- aCCGCCuGGCGAgUCGA---GCACGGACg -3'
miRNA:   3'- gGGUGG-CUGCU-AGCUuacUGUGUCUG- -5'
16219 5' -51.1 NC_004065.1 + 95898 0.72 0.934923
Target:  5'- aCCCACagaauGACGcucguUUGAcgGGCGCGGACg -3'
miRNA:   3'- -GGGUGg----CUGCu----AGCUuaCUGUGUCUG- -5'
16219 5' -51.1 NC_004065.1 + 26280 0.72 0.934923
Target:  5'- gUCACCGACGAcucgUCGGAUGAUgAC-GACg -3'
miRNA:   3'- gGGUGGCUGCU----AGCUUACUG-UGuCUG- -5'
16219 5' -51.1 NC_004065.1 + 59093 0.72 0.939716
Target:  5'- gCgCGCCGGCGAaaGAagGACACgAGACa -3'
miRNA:   3'- -GgGUGGCUGCUagCUuaCUGUG-UCUG- -5'
16219 5' -51.1 NC_004065.1 + 19413 0.72 0.939716
Target:  5'- aCCCGCCGGCG-UCGGcgGAggugcCGgAGGCa -3'
miRNA:   3'- -GGGUGGCUGCuAGCUuaCU-----GUgUCUG- -5'
16219 5' -51.1 NC_004065.1 + 153900 0.72 0.939716
Target:  5'- aCCCGCUGGCGGUCuGggUauagGACGgGGAUu -3'
miRNA:   3'- -GGGUGGCUGCUAG-CuuA----CUGUgUCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.