miRNA display CGI


Results 41 - 60 of 161 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16219 5' -51.1 NC_004065.1 + 55312 0.7 0.977285
Target:  5'- gCCACgGGCGAgagaccgagcggCGGAaacgGACACGGACc -3'
miRNA:   3'- gGGUGgCUGCUa-----------GCUUa---CUGUGUCUG- -5'
16219 5' -51.1 NC_004065.1 + 22842 0.7 0.977756
Target:  5'- gUCACCGACGA-CGGAgu-CugGGACg -3'
miRNA:   3'- gGGUGGCUGCUaGCUUacuGugUCUG- -5'
16219 5' -51.1 NC_004065.1 + 64409 0.7 0.977756
Target:  5'- aCCUAaaGACGGUCGAGaagcUGgucgcggccACGCAGACg -3'
miRNA:   3'- -GGGUggCUGCUAGCUU----AC---------UGUGUCUG- -5'
16219 5' -51.1 NC_004065.1 + 119807 0.7 0.979349
Target:  5'- gCCGCCGGCGAagcccucuucccucUCGAcgGGCgGCGGcGCg -3'
miRNA:   3'- gGGUGGCUGCU--------------AGCUuaCUG-UGUC-UG- -5'
16219 5' -51.1 NC_004065.1 + 32253 0.7 0.979788
Target:  5'- -aCACCGGCGAUCcGAUGAagaccuaCugGGACc -3'
miRNA:   3'- ggGUGGCUGCUAGcUUACU-------GugUCUG- -5'
16219 5' -51.1 NC_004065.1 + 9118 0.7 0.980005
Target:  5'- aCCACaagaucGCGAUCGAGcaccgaGACACGGACc -3'
miRNA:   3'- gGGUGgc----UGCUAGCUUa-----CUGUGUCUG- -5'
16219 5' -51.1 NC_004065.1 + 5444 0.7 0.98188
Target:  5'- cCCCGaCGGCGAUCGGacguacuacGUGAacgccuaCACGGGCg -3'
miRNA:   3'- -GGGUgGCUGCUAGCU---------UACU-------GUGUCUG- -5'
16219 5' -51.1 NC_004065.1 + 14428 0.7 0.98208
Target:  5'- uCUCACUGACGGUCG--UGACuuCGGAg -3'
miRNA:   3'- -GGGUGGCUGCUAGCuuACUGu-GUCUg -5'
16219 5' -51.1 NC_004065.1 + 194041 0.7 0.98208
Target:  5'- gCCGCCGuCGAacaUGuccAUGGCGCGGACg -3'
miRNA:   3'- gGGUGGCuGCUa--GCu--UACUGUGUCUG- -5'
16219 5' -51.1 NC_004065.1 + 110789 0.7 0.98208
Target:  5'- aCUCGCCGACGAUCuaccUGACGCugcgguacgcgaAGGCc -3'
miRNA:   3'- -GGGUGGCUGCUAGcuu-ACUGUG------------UCUG- -5'
16219 5' -51.1 NC_004065.1 + 96571 0.69 0.983988
Target:  5'- gUCCGCCGACGAgccgCGAcgcGugGC-GACg -3'
miRNA:   3'- -GGGUGGCUGCUa---GCUua-CugUGuCUG- -5'
16219 5' -51.1 NC_004065.1 + 66590 0.69 0.983988
Target:  5'- gCCUGCCGcACGAUg----GACGCGGACa -3'
miRNA:   3'- -GGGUGGC-UGCUAgcuuaCUGUGUCUG- -5'
16219 5' -51.1 NC_004065.1 + 18849 0.69 0.983988
Target:  5'- cCCCACCGACuGA-CGAGUgcGACAUcccGGCa -3'
miRNA:   3'- -GGGUGGCUG-CUaGCUUA--CUGUGu--CUG- -5'
16219 5' -51.1 NC_004065.1 + 82126 0.69 0.983988
Target:  5'- cCCgGCUGACGuAUCcGGcGGCGCGGACg -3'
miRNA:   3'- -GGgUGGCUGC-UAGcUUaCUGUGUCUG- -5'
16219 5' -51.1 NC_004065.1 + 118263 0.69 0.985739
Target:  5'- gCUCGCCGGCGGccUCGAcguacuUGACgaccacgucGCAGGCg -3'
miRNA:   3'- -GGGUGGCUGCU--AGCUu-----ACUG---------UGUCUG- -5'
16219 5' -51.1 NC_004065.1 + 184494 0.69 0.985739
Target:  5'- gCCGCCGccGCGGcgcCGggUGGCGUAGACc -3'
miRNA:   3'- gGGUGGC--UGCUa--GCuuACUGUGUCUG- -5'
16219 5' -51.1 NC_004065.1 + 182711 0.69 0.987339
Target:  5'- cCCCGCCG-CgGAUCGGccu-CACGGGCg -3'
miRNA:   3'- -GGGUGGCuG-CUAGCUuacuGUGUCUG- -5'
16219 5' -51.1 NC_004065.1 + 44831 0.69 0.987339
Target:  5'- aCCACCG-CGAcaCGGAcagcGACACGGGCc -3'
miRNA:   3'- gGGUGGCuGCUa-GCUUa---CUGUGUCUG- -5'
16219 5' -51.1 NC_004065.1 + 195116 0.69 0.988797
Target:  5'- gCUCGCCGGCGGugUCGccgcaGCACAGAUa -3'
miRNA:   3'- -GGGUGGCUGCU--AGCuuac-UGUGUCUG- -5'
16219 5' -51.1 NC_004065.1 + 87041 0.69 0.988797
Target:  5'- aCUGCCGaaagacGCGGUCGuagGACACcAGACa -3'
miRNA:   3'- gGGUGGC------UGCUAGCuuaCUGUG-UCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.