miRNA display CGI


Results 21 - 40 of 161 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16219 5' -51.1 NC_004065.1 + 128511 0.66 0.998655
Target:  5'- cUCCACCGACGA-CGAugccuccgcggcGUcGACGgAGAg -3'
miRNA:   3'- -GGGUGGCUGCUaGCU------------UA-CUGUgUCUg -5'
16219 5' -51.1 NC_004065.1 + 17090 0.66 0.998655
Target:  5'- aCCuCCGACGA--GggUGACAC-GAUc -3'
miRNA:   3'- gGGuGGCUGCUagCuuACUGUGuCUG- -5'
16219 5' -51.1 NC_004065.1 + 19794 0.66 0.998655
Target:  5'- gUCguCCG-CGGUCGucucGUGGCACAGGg -3'
miRNA:   3'- -GGguGGCuGCUAGCu---UACUGUGUCUg -5'
16219 5' -51.1 NC_004065.1 + 76018 0.66 0.998655
Target:  5'- gCCGCCGcCGccgCGAAcacGACAgAGACg -3'
miRNA:   3'- gGGUGGCuGCua-GCUUa--CUGUgUCUG- -5'
16219 5' -51.1 NC_004065.1 + 115454 0.66 0.998631
Target:  5'- cUCCGCCGcgcgggucGCGAUCcGGAUGAUgguaucccccccgAUAGGCg -3'
miRNA:   3'- -GGGUGGC--------UGCUAG-CUUACUG-------------UGUCUG- -5'
16219 5' -51.1 NC_004065.1 + 19900 0.66 0.99858
Target:  5'- gCCGCCGAgGaAUCGAagacgguagcggugGUGGCggugguuacgACGGACa -3'
miRNA:   3'- gGGUGGCUgC-UAGCU--------------UACUG----------UGUCUG- -5'
16219 5' -51.1 NC_004065.1 + 29257 0.66 0.99839
Target:  5'- gCCGCgCGACGAgagagCGAccGACGCGuGAg -3'
miRNA:   3'- gGGUG-GCUGCUa----GCUuaCUGUGU-CUg -5'
16219 5' -51.1 NC_004065.1 + 140279 0.66 0.99839
Target:  5'- uUCCACCG-CGggCGAGgaugGAUACAcACa -3'
miRNA:   3'- -GGGUGGCuGCuaGCUUa---CUGUGUcUG- -5'
16219 5' -51.1 NC_004065.1 + 120554 0.66 0.99839
Target:  5'- gCCGgCGGCGGUCGGcgcgaGCGGGCg -3'
miRNA:   3'- gGGUgGCUGCUAGCUuacugUGUCUG- -5'
16219 5' -51.1 NC_004065.1 + 142924 0.66 0.99839
Target:  5'- -aCGCCGGCcGUCGAGUuccGGCACcaGGGCc -3'
miRNA:   3'- ggGUGGCUGcUAGCUUA---CUGUG--UCUG- -5'
16219 5' -51.1 NC_004065.1 + 144255 0.66 0.99839
Target:  5'- gUCGCCGACuuaugucaGGUCGAGaGACcCGGGCc -3'
miRNA:   3'- gGGUGGCUG--------CUAGCUUaCUGuGUCUG- -5'
16219 5' -51.1 NC_004065.1 + 81675 0.66 0.99839
Target:  5'- -aCGCUGACGGacCGggUGACcaaGGACg -3'
miRNA:   3'- ggGUGGCUGCUa-GCuuACUGug-UCUG- -5'
16219 5' -51.1 NC_004065.1 + 194421 0.66 0.998082
Target:  5'- gCCGCCGugGAUCccgcaccGACACcgccGACg -3'
miRNA:   3'- gGGUGGCugCUAGcuua---CUGUGu---CUG- -5'
16219 5' -51.1 NC_004065.1 + 99913 0.66 0.998082
Target:  5'- gCUGCCGGCGucuucuUCGuccAUGACGcCGGACc -3'
miRNA:   3'- gGGUGGCUGCu-----AGCu--UACUGU-GUCUG- -5'
16219 5' -51.1 NC_004065.1 + 197537 0.66 0.998082
Target:  5'- -aCACCGA-GAUCGucaaggGACACuGGCg -3'
miRNA:   3'- ggGUGGCUgCUAGCuua---CUGUGuCUG- -5'
16219 5' -51.1 NC_004065.1 + 193854 0.66 0.998082
Target:  5'- cCCCcCCG-CGAgCGGcUGACACAG-Cg -3'
miRNA:   3'- -GGGuGGCuGCUaGCUuACUGUGUCuG- -5'
16219 5' -51.1 NC_004065.1 + 75891 0.67 0.997725
Target:  5'- aCCGCCcggGGCGAUCGucccaugugGACACAcGAUc -3'
miRNA:   3'- gGGUGG---CUGCUAGCuua------CUGUGU-CUG- -5'
16219 5' -51.1 NC_004065.1 + 133100 0.67 0.997725
Target:  5'- gCCGCgCGACGGUa-AGUGAgGCAGGu -3'
miRNA:   3'- gGGUG-GCUGCUAgcUUACUgUGUCUg -5'
16219 5' -51.1 NC_004065.1 + 139376 0.67 0.997725
Target:  5'- aCCACCGACGAcgCGGucUGAUGgGGuCg -3'
miRNA:   3'- gGGUGGCUGCUa-GCUu-ACUGUgUCuG- -5'
16219 5' -51.1 NC_004065.1 + 224851 0.67 0.997725
Target:  5'- uUCC-CCGACGGUCugcGGUGGCAguuugagccaucCGGACg -3'
miRNA:   3'- -GGGuGGCUGCUAGc--UUACUGU------------GUCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.