miRNA display CGI


Results 41 - 60 of 161 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16219 5' -51.1 NC_004065.1 + 75891 0.67 0.997725
Target:  5'- aCCGCCcggGGCGAUCGucccaugugGACACAcGAUc -3'
miRNA:   3'- gGGUGG---CUGCUAGCuua------CUGUGU-CUG- -5'
16219 5' -51.1 NC_004065.1 + 28888 0.67 0.997725
Target:  5'- aCUGCUGGCGccccgaGUCGGcgGACaagGCGGACa -3'
miRNA:   3'- gGGUGGCUGC------UAGCUuaCUG---UGUCUG- -5'
16219 5' -51.1 NC_004065.1 + 30698 0.67 0.997725
Target:  5'- gUCCGuCgCGACG-UCGAG-GugGCGGACg -3'
miRNA:   3'- -GGGU-G-GCUGCuAGCUUaCugUGUCUG- -5'
16219 5' -51.1 NC_004065.1 + 132870 0.67 0.997315
Target:  5'- aCCCGCCccucCGAgUCGGAUGACcaGCAG-Ca -3'
miRNA:   3'- -GGGUGGcu--GCU-AGCUUACUG--UGUCuG- -5'
16219 5' -51.1 NC_004065.1 + 94189 0.67 0.997315
Target:  5'- aCCCAUCGACGAggUCGccaGAuCGCcGACg -3'
miRNA:   3'- -GGGUGGCUGCU--AGCuuaCU-GUGuCUG- -5'
16219 5' -51.1 NC_004065.1 + 87696 0.67 0.997315
Target:  5'- gCCGCCGGCGuUCGAGaccuCGCGGuCg -3'
miRNA:   3'- gGGUGGCUGCuAGCUUacu-GUGUCuG- -5'
16219 5' -51.1 NC_004065.1 + 208708 0.67 0.997315
Target:  5'- aCCGCCGcgcacgccgagGCGGUCGu---GCACGGAUg -3'
miRNA:   3'- gGGUGGC-----------UGCUAGCuuacUGUGUCUG- -5'
16219 5' -51.1 NC_004065.1 + 80880 0.67 0.997315
Target:  5'- gCCCcCCGACGAagaucaggcgacUCGAcgaaacGACAcCAGGCa -3'
miRNA:   3'- -GGGuGGCUGCU------------AGCUua----CUGU-GUCUG- -5'
16219 5' -51.1 NC_004065.1 + 154130 0.67 0.997315
Target:  5'- gUCCACauggGACGAUCGccccgGGCGguGGCg -3'
miRNA:   3'- -GGGUGg---CUGCUAGCuua--CUGUguCUG- -5'
16219 5' -51.1 NC_004065.1 + 78315 0.67 0.996845
Target:  5'- -aCugCGugGG-CGAcccGACGCAGACg -3'
miRNA:   3'- ggGugGCugCUaGCUua-CUGUGUCUG- -5'
16219 5' -51.1 NC_004065.1 + 205428 0.67 0.996845
Target:  5'- -aCACCGGCGG-CGGcgGugGCGgcGACg -3'
miRNA:   3'- ggGUGGCUGCUaGCUuaCugUGU--CUG- -5'
16219 5' -51.1 NC_004065.1 + 185758 0.67 0.996845
Target:  5'- gCCCACaUGugGggCGucUGGCACAG-Ca -3'
miRNA:   3'- -GGGUG-GCugCuaGCuuACUGUGUCuG- -5'
16219 5' -51.1 NC_004065.1 + 105225 0.67 0.996845
Target:  5'- cCCgGCgGACG-UCGGacgaggagaugGUGGCGCAGAa -3'
miRNA:   3'- -GGgUGgCUGCuAGCU-----------UACUGUGUCUg -5'
16219 5' -51.1 NC_004065.1 + 38960 0.67 0.996845
Target:  5'- gCgACCGGCGcggggguucugGUgGAagGUGACGCAGAUg -3'
miRNA:   3'- gGgUGGCUGC-----------UAgCU--UACUGUGUCUG- -5'
16219 5' -51.1 NC_004065.1 + 106157 0.67 0.996845
Target:  5'- aCCugCGGCGcgugCGGAgcGACAUGGGCu -3'
miRNA:   3'- gGGugGCUGCua--GCUUa-CUGUGUCUG- -5'
16219 5' -51.1 NC_004065.1 + 203621 0.67 0.996845
Target:  5'- gCCGCCGugGcggaGUUGGA-GGCGgGGGCa -3'
miRNA:   3'- gGGUGGCugC----UAGCUUaCUGUgUCUG- -5'
16219 5' -51.1 NC_004065.1 + 23057 0.67 0.996795
Target:  5'- aCUACCuGACguucagagugaagGAUCGGAgaGACGCGGACc -3'
miRNA:   3'- gGGUGG-CUG-------------CUAGCUUa-CUGUGUCUG- -5'
16219 5' -51.1 NC_004065.1 + 111613 0.67 0.99631
Target:  5'- uUCGCCGGCGAgaUCGAucccGACGCcgaAGAUg -3'
miRNA:   3'- gGGUGGCUGCU--AGCUua--CUGUG---UCUG- -5'
16219 5' -51.1 NC_004065.1 + 80976 0.67 0.99631
Target:  5'- cUCCACCaaGAgGGUgGAGUaGCACAGAUu -3'
miRNA:   3'- -GGGUGG--CUgCUAgCUUAcUGUGUCUG- -5'
16219 5' -51.1 NC_004065.1 + 63083 0.67 0.99631
Target:  5'- gUCGCCGGCGAgCGAcgGGCguuGGACc -3'
miRNA:   3'- gGGUGGCUGCUaGCUuaCUGug-UCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.