miRNA display CGI


Results 61 - 80 of 161 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16219 5' -51.1 NC_004065.1 + 193488 0.67 0.99631
Target:  5'- cCCCGaugUCGGCGGUCGAGuaguuccaccUGGCGgAGAa -3'
miRNA:   3'- -GGGU---GGCUGCUAGCUU----------ACUGUgUCUg -5'
16219 5' -51.1 NC_004065.1 + 80976 0.67 0.99631
Target:  5'- cUCCACCaaGAgGGUgGAGUaGCACAGAUu -3'
miRNA:   3'- -GGGUGG--CUgCUAgCUUAcUGUGUCUG- -5'
16219 5' -51.1 NC_004065.1 + 149014 0.67 0.996252
Target:  5'- -gCugCGGCGAUCGGAaccucgggcUGACcucgggaGCGGGCg -3'
miRNA:   3'- ggGugGCUGCUAGCUU---------ACUG-------UGUCUG- -5'
16219 5' -51.1 NC_004065.1 + 1323 0.67 0.996252
Target:  5'- --aAUgGACGAUCGAGUGGuacauccccagccUACAGGCg -3'
miRNA:   3'- gggUGgCUGCUAGCUUACU-------------GUGUCUG- -5'
16219 5' -51.1 NC_004065.1 + 27903 0.67 0.995701
Target:  5'- uCCUGCCGACGggCGAGUGGguggucgugUugGGGg -3'
miRNA:   3'- -GGGUGGCUGCuaGCUUACU---------GugUCUg -5'
16219 5' -51.1 NC_004065.1 + 169971 0.67 0.995701
Target:  5'- -gUACCGACGGguUCGGAUucgggGACGguGACg -3'
miRNA:   3'- ggGUGGCUGCU--AGCUUA-----CUGUguCUG- -5'
16219 5' -51.1 NC_004065.1 + 159480 0.67 0.995701
Target:  5'- gCguUCGGCGGagaCGGAUGGCGCGGAUu -3'
miRNA:   3'- gGguGGCUGCUa--GCUUACUGUGUCUG- -5'
16219 5' -51.1 NC_004065.1 + 43138 0.67 0.995701
Target:  5'- aCCGCCGGCcg-CGGAaGACACgcgcacGGACg -3'
miRNA:   3'- gGGUGGCUGcuaGCUUaCUGUG------UCUG- -5'
16219 5' -51.1 NC_004065.1 + 150713 0.67 0.995701
Target:  5'- aCCGCCGcCGGUgGGA-GGCcCAGGCc -3'
miRNA:   3'- gGGUGGCuGCUAgCUUaCUGuGUCUG- -5'
16219 5' -51.1 NC_004065.1 + 142409 0.67 0.995701
Target:  5'- -gCGCUGACGAUCGAccuggcGACGCugaacGACg -3'
miRNA:   3'- ggGUGGCUGCUAGCUua----CUGUGu----CUG- -5'
16219 5' -51.1 NC_004065.1 + 93704 0.67 0.995701
Target:  5'- aCCCACCGGCuccuuAUUGAc-GAC-CAGACa -3'
miRNA:   3'- -GGGUGGCUGc----UAGCUuaCUGuGUCUG- -5'
16219 5' -51.1 NC_004065.1 + 200845 0.67 0.995636
Target:  5'- aCCCGguggaguUCGGCG-UCGAcgggGGCGCGGGCg -3'
miRNA:   3'- -GGGU-------GGCUGCuAGCUua--CUGUGUCUG- -5'
16219 5' -51.1 NC_004065.1 + 88432 0.67 0.995504
Target:  5'- gCCCGCCGccgucgcguuggugGCGGUCGccucGCGCAGAg -3'
miRNA:   3'- -GGGUGGC--------------UGCUAGCuuacUGUGUCUg -5'
16219 5' -51.1 NC_004065.1 + 189127 0.68 0.995013
Target:  5'- cUCCACCGugGccCGGAccaACAUAGGCg -3'
miRNA:   3'- -GGGUGGCugCuaGCUUac-UGUGUCUG- -5'
16219 5' -51.1 NC_004065.1 + 28626 0.68 0.995013
Target:  5'- aCCCGCCG-CGAcgcaucugugcgUCGAcGUGGCACcccccggcgAGGCg -3'
miRNA:   3'- -GGGUGGCuGCU------------AGCU-UACUGUG---------UCUG- -5'
16219 5' -51.1 NC_004065.1 + 53365 0.68 0.995013
Target:  5'- aCCCGCCGACcuuGAUCuacaGACAgAGAUc -3'
miRNA:   3'- -GGGUGGCUG---CUAGcuuaCUGUgUCUG- -5'
16219 5' -51.1 NC_004065.1 + 138249 0.68 0.994239
Target:  5'- gCCGCCGuCGAggagggUCGggUguccGAgGCGGACg -3'
miRNA:   3'- gGGUGGCuGCU------AGCuuA----CUgUGUCUG- -5'
16219 5' -51.1 NC_004065.1 + 385 0.68 0.994239
Target:  5'- gCCGCCGGCcg--GGAUGGCGCAcgaGACg -3'
miRNA:   3'- gGGUGGCUGcuagCUUACUGUGU---CUG- -5'
16219 5' -51.1 NC_004065.1 + 75957 0.68 0.994239
Target:  5'- aCUCugCG-CGAUCcAggGACACGGAUg -3'
miRNA:   3'- -GGGugGCuGCUAGcUuaCUGUGUCUG- -5'
16219 5' -51.1 NC_004065.1 + 80395 0.68 0.994239
Target:  5'- gCCUGCCGACGG-CGccGGUGACGguGgACg -3'
miRNA:   3'- -GGGUGGCUGCUaGC--UUACUGUguC-UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.